Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0209
         (648 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK000003-1|BAA92228.1|  235|Homo sapiens FLJ00003 protein protein.     31   4.7  
AJ001481-1|CAA04776.1|  170|Homo sapiens DUX1 protein.                 31   4.7  
AF133131-2|AAD33598.1|  170|Homo sapiens homeobox protein DUX5 p...    31   4.7  
AF133131-1|AAL02243.1|  197|Homo sapiens homeobox protein DUX3 p...    31   4.7  
AF133130-2|AAD33597.1|  170|Homo sapiens homeobox protein DUX3 p...    30   8.2  
AF133130-1|AAL02242.1|  197|Homo sapiens homeobox protein DUX3 p...    30   8.2  

>AK000003-1|BAA92228.1|  235|Homo sapiens FLJ00003 protein protein.
          Length = 235

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 24/81 (29%), Positives = 35/81 (43%)
 Frame = -2

Query: 548 SNSPPGSVLEPDHGEF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVV 369
           S+  PGS  +P H    TA + + + P    G     P +++ R    P+  S  T    
Sbjct: 50  SSHTPGS-RQPGHASVPTARARTLSPPQHRCGFACLGPREVVGRTSGHPSMQS--TPGFT 106

Query: 368 VFQRRSRETISHLCYTSHVSL 306
               R RET S LC+  H +L
Sbjct: 107 FGNLRVRETSSRLCHKLHQNL 127


>AJ001481-1|CAA04776.1|  170|Homo sapiens DUX1 protein.
          Length = 170

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 18/63 (28%), Positives = 35/63 (55%)
 Frame = +2

Query: 455 QACRVVTWRKRSSPFKTPRDPVRGHCQAGSLTGAVHLSKNNAGVLRQLSEDRNLALSKRA 634
           ++C++   R++S P+   RDP +G  +  ++TG+       A +LR   +DR   ++ R 
Sbjct: 71  RSCQLRQHRRQSRPWPGRRDPQKGRRKRTAITGS-----QTALLLRAFEKDRFPGIAARE 125

Query: 635 KLA 643
           +LA
Sbjct: 126 ELA 128


>AF133131-2|AAD33598.1|  170|Homo sapiens homeobox protein DUX5
           protein.
          Length = 170

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 18/63 (28%), Positives = 35/63 (55%)
 Frame = +2

Query: 455 QACRVVTWRKRSSPFKTPRDPVRGHCQAGSLTGAVHLSKNNAGVLRQLSEDRNLALSKRA 634
           ++C++   R++S P+   RDP +G  +  ++TG+       A +LR   +DR   ++ R 
Sbjct: 71  RSCQLRQHRRQSRPWPGRRDPQKGRRKRTAITGS-----QTALLLRAFEKDRFPGIAARE 125

Query: 635 KLA 643
           +LA
Sbjct: 126 ELA 128


>AF133131-1|AAL02243.1|  197|Homo sapiens homeobox protein DUX3
           protein.
          Length = 197

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 18/63 (28%), Positives = 35/63 (55%)
 Frame = +2

Query: 455 QACRVVTWRKRSSPFKTPRDPVRGHCQAGSLTGAVHLSKNNAGVLRQLSEDRNLALSKRA 634
           ++C++   R++S P+   RDP +G  +  ++TG+       A +LR   +DR   ++ R 
Sbjct: 98  RSCQLRQHRRQSRPWPGRRDPQKGRRKRTAITGS-----QTALLLRAFEKDRFPGIAARE 152

Query: 635 KLA 643
           +LA
Sbjct: 153 ELA 155


>AF133130-2|AAD33597.1|  170|Homo sapiens homeobox protein DUX3
           protein.
          Length = 170

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 18/63 (28%), Positives = 34/63 (53%)
 Frame = +2

Query: 455 QACRVVTWRKRSSPFKTPRDPVRGHCQAGSLTGAVHLSKNNAGVLRQLSEDRNLALSKRA 634
           ++C++   R++S P+   RDP +G  +  ++TG+       A +LR   +DR   +  R 
Sbjct: 71  RSCQLRQHRRQSRPWPGRRDPQKGRRKRTAITGS-----QTALLLRAFEKDRFPGIPARE 125

Query: 635 KLA 643
           +LA
Sbjct: 126 ELA 128


>AF133130-1|AAL02242.1|  197|Homo sapiens homeobox protein DUX3
           protein.
          Length = 197

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 18/63 (28%), Positives = 34/63 (53%)
 Frame = +2

Query: 455 QACRVVTWRKRSSPFKTPRDPVRGHCQAGSLTGAVHLSKNNAGVLRQLSEDRNLALSKRA 634
           ++C++   R++S P+   RDP +G  +  ++TG+       A +LR   +DR   +  R 
Sbjct: 98  RSCQLRQHRRQSRPWPGRRDPQKGRRKRTAITGS-----QTALLLRAFEKDRFPGIPARE 152

Query: 635 KLA 643
           +LA
Sbjct: 153 ELA 155


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,661,726
Number of Sequences: 237096
Number of extensions: 2119710
Number of successful extensions: 4714
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4714
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)