Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0209
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical...    31   0.53 
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical...    31   0.53 
Z50029-1|CAA90340.2|  460|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AC006712-8|AAU20838.1|  450|Caenorhabditis elegans Hypothetical ...    30   1.2  
AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    28   5.0  

>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3b protein.
          Length = 1398

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 612 FLSSLSCLRTPALFFDRCTAPVKLPAWQCPRTGS 511
           FL+   C  T  +F + C  P+ LPA  C  TGS
Sbjct: 735 FLTQEDCAATCDVFTNPCNQPIALPATLCSGTGS 768


>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
            protein Y43F8B.3a protein.
          Length = 1816

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 612  FLSSLSCLRTPALFFDRCTAPVKLPAWQCPRTGS 511
            FL+   C  T  +F + C  P+ LPA  C  TGS
Sbjct: 1153 FLTQEDCAATCDVFTNPCNQPIALPATLCSGTGS 1186


>Z50029-1|CAA90340.2|  460|Caenorhabditis elegans Hypothetical
           protein ZC504.1 protein.
          Length = 460

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -1

Query: 624 LNARFLSSLSCLRTPALFFDRCTAPVKLPAWQCPRTGSRGVLNGDERF-RHVTTLHA 457
           L  RF  S +CL   +L   R ++PV     +CP TG R V   D+ F RHV   H+
Sbjct: 48  LCTRFCQSTACLAGQSLLLARDSSPVNCKDMECP-TGYRCVY--DKLFNRHVCCGHS 101


>AC006712-8|AAU20838.1|  450|Caenorhabditis elegans Hypothetical
           protein Y119C1B.3 protein.
          Length = 450

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 553 PSQTPRLAVSSNRITGSFKRRRAFPPRHHSARLER 449
           P++TP+   SS   + S +R + FP  HH  RL+R
Sbjct: 409 PTRTPKQRRSSRIRSISDEREQLFPRHHHGRRLDR 443


>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = -2

Query: 458 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCY 324
           +GT+ +   DIID   +P N +S++ +  +++  R  ET++H+ +
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHMIF 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,964,528
Number of Sequences: 27780
Number of extensions: 313692
Number of successful extensions: 816
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)