Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0209
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-...    31   0.66 
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro...    31   0.66 
At2g34900.2 68415.m04284 DNA-binding bromodomain-containing prot...    29   2.7  
At2g34900.1 68415.m04285 DNA-binding bromodomain-containing prot...    29   2.7  
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    29   3.5  
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    29   3.5  
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi...    28   6.1  
At2g34780.1 68415.m04270 expressed protein                             28   6.1  
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ...    28   6.1  
At5g05360.2 68418.m00577 expressed protein similar to unknown pr...    27   8.1  
At5g05360.1 68418.m00578 expressed protein similar to unknown pr...    27   8.1  
At3g47910.1 68416.m05224 expressed protein low similarity to non...    27   8.1  

>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
           GTP-binding protein GUF1 - Saccharomyces cerevisiae,
           PIR:S50374
          Length = 661

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -2

Query: 458 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHV 312
           LG +H  PA +I+R P PP  +S   +++++F     E    +CY S V
Sbjct: 231 LGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYVSVV 277


>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
           protein similar to PIR|JC7196 phytocyanin-related
           protein Pn14 {Ipomoea nil}; contains Pfam profile
           PF02298: Plastocyanin-like domain
          Length = 349

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -2

Query: 572 SLTDVPPQSNSPPGSVLEPDHGEF*TATSVS-ATSPLCTLGTKHRAPADIIDRAPLPPNR 396
           S T  PP S +PPG    P      ++++VS ATSP  ++  K  +P       P PP  
Sbjct: 169 SPTTSPPGSTTPPGGAHSPK-----SSSAVSPATSPPGSMAPKSGSPVSPTTSPPAPPKS 223

Query: 395 VS 390
            S
Sbjct: 224 TS 225


>At2g34900.2 68415.m04284 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 276

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +2

Query: 527 HCQAGSLTGAVHLSKNNAGVLRQLSEDRNLALSKRAKLA 643
           + Q  + TG   ++KNNA   R++S+  N A  KRAK A
Sbjct: 238 NAQNNNNTGTGEINKNNAKRRREISDAINKASIKRAKKA 276


>At2g34900.1 68415.m04285 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 386

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +2

Query: 527 HCQAGSLTGAVHLSKNNAGVLRQLSEDRNLALSKRAKLA 643
           + Q  + TG   ++KNNA   R++S+  N A  KRAK A
Sbjct: 348 NAQNNNNTGTGEINKNNAKRRREISDAINKASIKRAKKA 386


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -2

Query: 131 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 21
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 33  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -2

Query: 131 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 21
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 32  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68


>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
           like protein A, Arabidopsis thaliana, gb:Q07970
          Length = 790

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 422 DRAPLPPNRVSNETMKVVVFQRRSRET 342
           +RAPLP   V  E +  + F +R +ET
Sbjct: 7   NRAPLPSPNVKKEALSSIPFDKRRKET 33


>At2g34780.1 68415.m04270 expressed protein
          Length = 1297

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -1

Query: 366 FSATIARNDLPLMLHLSCLLTMPD*SQAQQGLLSPLIPQARSLGC 232
           FS   A  D   +L L  L        A++ LLSP +PQ   LGC
Sbjct: 713 FSEDFAATDYMKLLELDNLEEENYYQMARESLLSPDLPQVDFLGC 757


>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
           F-box family protein
          Length = 379

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 473 SPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 336
           S LC LG+  R PAD I+   L   R+    M  +V  R S + I+
Sbjct: 54  SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98


>At5g05360.2 68418.m00577 expressed protein similar to unknown
           protein (pir||T02500)
          Length = 153

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 413 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 303
           P  P+R S      V  ++ +R+T SHL Y++ V L+
Sbjct: 20  PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56


>At5g05360.1 68418.m00578 expressed protein similar to unknown
           protein (pir||T02500)
          Length = 163

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 413 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 303
           P  P+R S      V  ++ +R+T SHL Y++ V L+
Sbjct: 20  PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56


>At3g47910.1 68416.m05224 expressed protein low similarity to
            nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
            GI:189036; contains Pfam profiles PF04780: Protein of
            unknown function (DUF629), PF04781: Protein of unknown
            function (DUF627)
          Length = 1290

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 461  TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 366
            T+G+ HR+ AD ++ +PLP   V + +   +V
Sbjct: 972  TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,377,967
Number of Sequences: 28952
Number of extensions: 305090
Number of successful extensions: 753
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)