Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0208
         (596 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                24   0.98 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   6.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.2  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -3

Query: 294 PNRVSNETMKV---VVFSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSP 142
           P +++N+  ++   ++ +D R   SP   TP+ + Y   +E+ +  S F  D+P
Sbjct: 4   PQKLANKFYRISPQILKNDKRIYLSPR--TPIKNVYKNNIETKNQLSPFNIDTP 55


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 219 ATPLMSPYNARLESSSTGSSFP 154
           A  + SP   +   SSTGSS P
Sbjct: 347 AKQMASPEPPKSSESSTGSSIP 368


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 150 QRGKKTLLSLTLVWHCKE 203
           + G KTLLS T +W  ++
Sbjct: 231 KNGMKTLLSETDIWEVEQ 248


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 446  RYICQRITQVS*GQLSEDRNLRGAKGQKLA 535
            + + + +T  + GQL    NL   KG KLA
Sbjct: 1112 KILAKVLTSSNSGQLISVENLLAQKGLKLA 1141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,843
Number of Sequences: 438
Number of extensions: 3961
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)