Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0208
(596 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot... 29 2.4
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si... 29 3.1
At1g01110.1 68414.m00014 expressed protein contains Prosite PS00... 28 4.1
At3g62370.1 68416.m07006 expressed protein 28 5.4
At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid t... 28 5.4
At5g62160.1 68418.m07801 metal transporter, putative (ZIP12) ide... 27 7.2
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 27 7.2
At3g47910.1 68416.m05224 expressed protein low similarity to non... 27 7.2
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 27 7.2
At5g07730.1 68418.m00886 expressed protein 27 9.5
At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein si... 27 9.5
>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
similar to SP|P22418 Fructose-1,6-bisphosphatase,
chloroplast precursor (EC 3.1.3.11)
(D-fructose-1,6-bisphosphate 1-phosphohydrolase)
(FBPase) {Spinacia oleracea}; contains Pfam profile
PF00316: fructose-1,6-bisphosphatase
Length = 404
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 219 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 109
A+ + SP+N+ L S SS +D P PL +VS D
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSND 141
>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
similarity to AMP-binding protein GI:1903034 from
[Brassica napus]; contains Pfam AMP-binding domain
PF00501
Length = 545
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -2
Query: 451 VPPQSNSPPGSVLE-PDHAGVLNGDE-RFRHVTTLHAWNET 335
+P SNS P +VL + A + GD H TT+H W+ET
Sbjct: 5 LPHASNSCPLTVLGFLERAASVFGDSPSLLHTTTVHTWSET 45
>At1g01110.1 68414.m00014 expressed protein contains Prosite
PS00165: Serine/threonine dehydratases
pyridoxal-phosphate attachment site
Length = 364
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -3
Query: 312 DRAPLPPNRVSNETMKVVVFSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADS 145
DRA L R+S + D+ + RSP++ + S + LE S SS +S
Sbjct: 291 DRAGLVKKRLSYPVPPPAEYEDNNSLRSPSFKSVAGSHFGGMLEQQSNYSSCCTES 346
>At3g62370.1 68416.m07006 expressed protein
Length = 361
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -2
Query: 436 NSPPGSVL--EPDHAGVLNGDERFRHVTTLHAWN 341
N+ PG + P G NG +RF H+ ++AWN
Sbjct: 160 NAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWN 193
>At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein low similarity to
glucoamylase S1/S2 [Precursor] from Saccharomyces
cerevisiae [SP|P08640], proteophosphoglycan from
Leishmania major [GI:5420387]; contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 256
Score = 27.9 bits (59), Expect = 5.4
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Frame = -3
Query: 387 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFSDDRAKRSP--TYAT 214
T + SA SP T + + + R PP VS+ + V S ++ SP ++++
Sbjct: 140 TTSPSSAKSPAITPSSPAVSHSPPPVRHSSPP--VSHSSPPVSHSSPPTSRSSPAVSHSS 197
Query: 213 PLMSPYN-ARLESSSTGSSFPADSPKPVPLAVVS 115
P+++ + + SSST SS A SP P P +S
Sbjct: 198 PVVAASSPVKAVSSSTASSPRAASPSPSPSPSIS 231
>At5g62160.1 68418.m07801 metal transporter, putative (ZIP12)
identical to putative metal transporter ZIP12
[Arabidopsis thaliana] gi|17385794|gb|AAL38437; similar
to zinc transporter protein ZIP1 [Glycine max]
gi|15418778|gb|AAK37761; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 355
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 439 TGAVHLSKNNAGVLRPAQRGQKPPWSKRAKAGLIQM 546
TG VH+ + L + G++PPW GL+ M
Sbjct: 93 TGFVHILPDATESLTSSCLGEEPPWGDFPMTGLVAM 128
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -3
Query: 231 SPTYATPLMSPYNARLESSSTGSSFPADSPK-PVPLA 124
SPT + + SP A ++ + +S P +SPK P P++
Sbjct: 41 SPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVS 77
>At3g47910.1 68416.m05224 expressed protein low similarity to
nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
GI:189036; contains Pfam profiles PF04780: Protein of
unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1290
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 351 TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 256
T+G+ HR+ AD ++ +PLP V + + +V
Sbjct: 972 TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 33 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKK 164
G +P + +SD + INE+ P +AK +E + GK+
Sbjct: 70 GGGLPNNGVSDTNSQINEVTVTP-QVIAKETVKENGLQKNGGKR 112
>At5g07730.1 68418.m00886 expressed protein
Length = 264
Score = 27.1 bits (57), Expect = 9.5
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = -3
Query: 312 DRAPLPPNRVSNETMKVVVFSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPV 133
D PP N + V+ DR SP+ ++ S + R SSS+ S FP+DS
Sbjct: 36 DGVVFPPIYHENLHVASSVYGVDRYLESPSESSSPSSS-SRRSGSSSSFSLFPSDSDGQT 94
Query: 132 PLAVVSLDSR 103
L D +
Sbjct: 95 SLTAFEFDRK 104
>At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase precursor GI:4097948 from
[Oryza sativa]
Length = 429
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -3
Query: 387 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKV 262
TA + T+ T+G + PA I L P+R++ + + +
Sbjct: 18 TAIATPTTTSATTIGVTYSTPASISGTVQLSPDRIAEKVVSM 59
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,750,280
Number of Sequences: 28952
Number of extensions: 304149
Number of successful extensions: 865
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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