Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0206
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    27   2.6  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    27   2.6  
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    26   3.4  
SPBC27B12.14 |||mitochondrial membrane protein complex assembly ...    26   4.5  
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    25   6.0  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   6.0  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    25   7.9  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.9  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.9  

>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 21/79 (26%), Positives = 36/79 (45%)
 Frame = +2

Query: 8   RRSLREDEIIELRS*FSHSRGVSFPISE*RRALSTNAGTRKMVNYAWSGRSQGKP*WRTV 187
           RR+L  D  + L +  SH   ++    + R  L+ + G  +++N   +GR Q      T+
Sbjct: 25  RRALDCDSEMSLMNSLSHLVYLTSTSPKIREILTMDGGLMRLMNILRAGRGQTFA-RMTI 83

Query: 188 AILTCKSIVGTGYRGERLI 244
             L  + +V  G RG   I
Sbjct: 84  WQLALQCVVNVGIRGSEAI 102


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 524 PMSVFWRLKLRLVHPTAPVLLTKIG 450
           P S+    +LR V+P +P+LLT  G
Sbjct: 319 PYSLIGHKELRFVYPISPILLTLAG 343


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 495 TFGSSHSASSAYQNWPTWHRHQISGFMVGVTRSSPPF 385
           TF   H+ +  Y + PTW  H+     +GVT  + P+
Sbjct: 121 TFYVKHTGAHVYISNPTWPVHRTLWEKLGVTVDTYPY 157


>SPBC27B12.14 |||mitochondrial membrane protein complex assembly
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 72

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +2

Query: 209 IVGTGYRGERLIEPSIAGSVRSFPQDSWRRYKILK----QSHPVKRMI 340
           IVG GY   +L  PS    V S P D    Y++ K    Q+  V RMI
Sbjct: 14  IVGFGYMTMKLTTPSPERVVNSLPPDLRASYEMNKKDRSQAEGVLRMI 61


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -3

Query: 273 LRTEPAIDGSISLSPLYPVPTIDLHVRIAT 184
           L  +PA    +SL   + +P++DLHV +++
Sbjct: 120 LAEDPAFIPEVSLYDAFNLPSVDLHVDMSS 149


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -2

Query: 355 GPNASNHSLYRMRLF*NFISTPAILRETSDGTSYRWFD*SFAPIPSSDDRF 203
           GP  +NHS        + + T + LR  S   +  +F     P+PSSDD F
Sbjct: 160 GPVRTNHSSSLSNSSNSLLQTESSLRPNSSFVNSPFF-----PLPSSDDLF 205


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 123 VPAFVLRARLHSLIGNETPRECENH 49
           VP FV    LH   G++TP  C  H
Sbjct: 622 VPGFVSSPNLHLAGGSDTPIYCIEH 646


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 209 SICTSESLRSSIRVSPDFDLTRHSSPSFGSQHLCS 105
           S  TS S ++SI  S   + + HSSPSF  + L S
Sbjct: 460 SPATSPSNQASIHASFTKESSTHSSPSFTLESLFS 494


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 209  IVGTGYRGERLIEPSIAGSVRSFPQDSWRRYKIL 310
            ++GT    ++L E  I G   SFP D + R++ L
Sbjct: 2282 LLGTRVANKKLKERFIKGLNSSFPSDLFSRFQFL 2315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,329
Number of Sequences: 5004
Number of extensions: 55935
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)