Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0206
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0563 - 19542116-19542217,19542631-19542712,19543823-195445...    29   2.0  
04_01_0088 - 955276-955989,956551-956736                               29   2.7  
04_04_1358 + 32869222-32869306,32869947-32870008,32870301-328703...    28   6.1  
04_03_0897 - 20646750-20646918,20647927-20648038,20649650-206501...    28   6.1  

>07_03_0563 -
           19542116-19542217,19542631-19542712,19543823-19544595,
           19545207-19545296,19545612-19545689,19546112-19546207,
           19546285-19546365,19546587-19546787,19546875-19546967,
           19547052-19547116,19547684-19547715,19548844-19548956
          Length = 601

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = -1

Query: 572 HGHRPAVMSDQRLS-WCPMSVFWRLKLRLV-HPTAPVLLTKIGPLGTVIRSPASWLE*PG 399
           H   P    D  +S +C         LR+V HP     L  I  + +++ SPA W   P 
Sbjct: 368 HEFHPMTQGDHSISDYCQSMKTTVDALRIVGHPVTESQLVSISCVASILASPAPWTTAP- 426

Query: 398 VLPHL 384
           VLP L
Sbjct: 427 VLPSL 431


>04_01_0088 - 955276-955989,956551-956736
          Length = 299

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 453 WPTWHRHQISGFMVGVTRSSP 391
           WPT+ + Q+SG +V VTR  P
Sbjct: 73  WPTFSQQQVSGGVVAVTRHVP 93


>04_04_1358 +
           32869222-32869306,32869947-32870008,32870301-32870393,
           32870640-32870761,32873139-32873167,32873586-32873891,
           32873977-32874035,32874148-32874279,32874414-32874455,
           32874560-32875093,32875189-32875379,32875538-32876027,
           32876273-32876335,32876704-32876805,32876895-32877215,
           32877294-32877386,32877484-32877585,32877718-32877822,
           32877933-32878066,32878429-32878612,32879226-32879357,
           32879447-32879559,32879628-32879709,32880328-32881992
          Length = 1746

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 490 KRSLRRQKTLMGHHERRWSLMTAGRW 567
           +R  R  +T++ HH  RWSL   G++
Sbjct: 105 RRGNRVAETMLSHHRGRWSLTHTGQY 130


>04_03_0897 -
           20646750-20646918,20647927-20648038,20649650-20650108,
           20650237-20650330,20650449-20650525,20650637-20650688,
           20650770-20650927,20651191-20651281,20651465-20652529
          Length = 758

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +1

Query: 130 DGELCLVRSKSGETLMEDRSDSDVQIDRRNWV*GRKT 240
           DG+  +V + SGE    D+S  ++Q+D+  ++ G+K+
Sbjct: 436 DGKGFIVGTTSGECRFYDQSGENIQLDKELFMQGKKS 472


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,959,529
Number of Sequences: 37544
Number of extensions: 419357
Number of successful extensions: 885
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)