Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0206
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92789-2|CAB07219.1|  344|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U67953-4|AAL13329.1|  732|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U23515-3|AAU87817.1|  345|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z92789-2|CAB07219.1|  344|Caenorhabditis elegans Hypothetical
           protein H02I12.5 protein.
          Length = 344

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 227 RGERLIEPSIAGSVRSFPQDSWRRYKILKQSHPVKRMIRGI 349
           RG+R +E  I  +  S  +D +RRY+ ++    VK M R +
Sbjct: 261 RGKRHVETRIVYNNNSSARDPFRRYRYIELEQTVKCMNRRV 301


>U67953-4|AAL13329.1|  732|Caenorhabditis elegans Hypothetical
           protein ZC13.3 protein.
          Length = 732

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 322 MRLF*NFISTPAILRETSDGTSYRW 248
           MR   +F+  P+ILR  +   +YRW
Sbjct: 646 MRTVSSFVQCPSILRSVTSKNAYRW 670


>U23515-3|AAU87817.1|  345|Caenorhabditis elegans Hypothetical
           protein R144.6 protein.
          Length = 345

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = -1

Query: 305 FYIDASYPEGNFGRNQL*MVRLVFRPY--TQFRRSICTSESLRSSIRVSPDFDLTRHSSP 132
           F I+++ PE  F  N   +V +VF  +  +Q R +   + S RS + V+PD DLT   +P
Sbjct: 110 FGINSTVPEYPF-LNYFGLVLVVFGGFLFSQIRPNEPQTASERSPLMVAPDDDLTDDVAP 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,294,837
Number of Sequences: 27780
Number of extensions: 321969
Number of successful extensions: 698
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)