Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0206
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   5.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   5.0  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   6.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   8.7  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    21   8.7  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   8.7  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    21   8.7  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   8.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.7  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 237 LSPLYPVPTID 205
           LSP+YP P +D
Sbjct: 71  LSPIYPSPMVD 81


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 237 LSPLYPVPTID 205
           LSP+YP P +D
Sbjct: 71  LSPIYPSPMVD 81


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 229 PIPSSDDRFARQNRYGPPSGFP 164
           P  S  ++  R    GPP+ FP
Sbjct: 364 PFVSIQEQIPRLRYIGPPTSFP 385


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 236 RLIEPSIAGSVRSFPQDSWRRYKILKQSH 322
           R +E S   SV S  + S R YK L  SH
Sbjct: 30  RNVEASGQRSVSSGFRSSLRNYKTLISSH 58


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 229 PIPSSDDRFARQNRYGPPSGFP 164
           P  S  ++  R    GPP+ FP
Sbjct: 364 PFVSIQEQIPRFRYIGPPTSFP 385


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 229 PIPSSDDRFARQNRYGPPSGFP 164
           P  S  ++  R    GPP+ FP
Sbjct: 364 PFVSIQEQIPRFRYIGPPTSFP 385


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 229 PIPSSDDRFARQNRYGPPSGFP 164
           P  S  ++  R    GPP+ FP
Sbjct: 364 PFVSIQEQIPRFRYIGPPTSFP 385


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 229 PIPSSDDRFARQNRYGPPSGFP 164
           P  S  ++  R    GPP+ FP
Sbjct: 353 PFVSIQEQIPRFRYIGPPTSFP 374


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/39 (23%), Positives = 18/39 (46%)
 Frame = -1

Query: 566 HRPAVMSDQRLSWCPMSVFWRLKLRLVHPTAPVLLTKIG 450
           HR   +  Q+++W  + +       L H   P+ + +IG
Sbjct: 549 HRDTYIHAQQIAWMALKMIQACSHHLTHKGKPIRM-RIG 586


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,979
Number of Sequences: 438
Number of extensions: 4385
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)