Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0206
         (575 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26) ...    31   0.55 
At2g44580.1 68415.m05548 zinc finger (C3HC4-type RING finger) fa...    29   2.9  
At3g10650.1 68416.m01281 expressed protein                             27   9.0  

>At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26)
            similar to GI:11993492; RNA binding protein - Homo
            sapiens, EMBL:AB016089 (N-terminus), several ubiquitin
            carboxyl-terminal hydrolases from aa pos. 712
          Length = 1067

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 139  LCLVRSKSGETLMEDRSDSDVQIDRRNWV*GRKTN 243
            +C VR K     M + SDS  ++DRR     R+TN
Sbjct: 928  VCFVRGKEAPKAMLEASDSSFEVDRRTSKRSRRTN 962


>At2g44580.1 68415.m05548 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 624

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 493 RSLRRQKTLMGHHERRWSLMTA 558
           RS RR +T   HH RRW   TA
Sbjct: 519 RSWRRYRTFTVHHRRRWRKTTA 540


>At3g10650.1 68416.m01281 expressed protein
          Length = 1309

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -3

Query: 495 TFGSSHSASSAYQNWPTWHRHQISGFMVGVTRSSPPFKVGD*VEVVSAP 349
           +F ++H++SS +   PT +             S+ PFK G      SAP
Sbjct: 793 SFAATHNSSSIFGKLPTSNDSNSQSTSASPLSSTSPFKFGQPAAPFSAP 841


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,895,991
Number of Sequences: 28952
Number of extensions: 315860
Number of successful extensions: 627
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)