Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0205
         (606 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.0  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.0  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   3.5  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    22   4.6  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   6.1  
AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase l...    21   6.1  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = -2

Query: 248 PVADQTFAVKENLSIFVHQKVCDNHYNIL*IYNMWHPLKYPIYTIR*QE 102
           PVA+++  ++    + + Q +  +  N L I N+W  L++  Y ++  E
Sbjct: 21  PVANESEPLEVKFGLTLQQIIDVDEKNQLLITNIWLSLEWNDYNLKWNE 69


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = -2

Query: 248 PVADQTFAVKENLSIFVHQKVCDNHYNIL*IYNMWHPLKYPIYTIR*QE 102
           PVA+++  ++    + + Q +  +  N L I N+W  L++  Y ++  E
Sbjct: 21  PVANESEPLEVKFGLTLQQIIDVDEKNQLLITNIWLSLEWNDYNLKWNE 69


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 397 KGMQSNYVKLFMGKKDFDCYELEKK 471
           K +  N+ +   G+K F+C E  K+
Sbjct: 147 KHVLQNHERTHTGEKPFECQECHKR 171


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 41  MFLSSTLSEPITISLVG 91
           MFL +T   P  ISLVG
Sbjct: 372 MFLKATEMSPTDISLVG 388


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 292 NESNGNKKALVISLH 336
           N+SNGN + ++ SLH
Sbjct: 136 NKSNGNGQIMLNSLH 150


>AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase
          like protein E1 protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = -1

Query: 84 KDIVIGSDNVLLKNI 40
          K++++GS+N L+ N+
Sbjct: 46 KNLIVGSENCLVLNV 60


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,089
Number of Sequences: 336
Number of extensions: 3144
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)