Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0205
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    29   0.40 
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    26   4.9  
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    25   6.5  
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    25   6.5  
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces...    25   8.6  

>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 516 PKSLIIFDEIHHMCPSVLDTIIPMLD 593
           P S+I+FDEI    P VL  ++ +LD
Sbjct: 686 PYSVILFDEIEKAAPEVLTVLLQVLD 711


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/16 (68%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
 Frame = +3

Query: 525 LIIFDEIHHMC-PSVL 569
           L+IFDE+HHM  PS L
Sbjct: 144 LLIFDEVHHMASPSYL 159


>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +1

Query: 217 SFTANVWSATGQ*LFNIISAHKENINESNGNKKALVISLHG 339
           S  ++ W++  +   N++   K    +    KK L ISL G
Sbjct: 329 SLASDTWASPAEKALNLVRMQKAMAKKEKKKKKVLSISLSG 369


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 280 KENINESNGNKKALVISLHGWSGVGKNFASTMIAEAIYRKGMQSNYVK 423
           ++N +ES+ N + +   LH  S +  +    M + AIY   M +N  K
Sbjct: 105 QQNAHESSYNSRFIPPVLHSTSSLPASQGGGMPSPAIYSSSMATNLNK 152


>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +1

Query: 325 ISLHGWSGVGKNFASTMIAEAIYRKGMQSN--YVKLFMG 435
           +  +GW  VG    +  +AEA Y   +  N  Y +L+MG
Sbjct: 8   VKSYGWGKVGHESLAAKLAEAGYGFEVDPNTPYAELWMG 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,633
Number of Sequences: 5004
Number of extensions: 51912
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)