Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0205
         (606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287...    31   0.54 
02_05_1010 + 33477878-33478446,33478709-33478834,33478905-334791...    29   2.2  
03_05_0725 + 27155736-27155746,27155798-27155949,27156108-271580...    28   5.0  
02_04_0114 + 19879468-19880671,19882007-19882179,19882265-198826...    28   5.0  
05_03_0281 + 11560402-11560569,11561373-11561579,11562966-115631...    28   6.6  
04_04_0316 - 24338774-24339367                                         28   6.6  
11_04_0310 + 16218439-16219383                                         27   8.7  
03_05_0862 + 28353235-28354431                                         27   8.7  

>08_01_0321 +
           2872609-2873027,2873477-2873905,2874743-2874944,
           2875909-2875947,2876309-2876354,2877380-2877922,
           2878827-2880847,2880972-2881215,2881642-2881684,
           2881923-2881962,2883580-2883675,2883712-2883759,
           2883964-2884290
          Length = 1498

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +1

Query: 256 LFNIISAHKENINESNGNKKALVISLHGWSGVGKNFASTMIAEAI 390
           L  ++S H+ + N +  N+K  ++ + G  G+GK   +T + E I
Sbjct: 179 LIKMLSQHERDNNLNTSNRKTKIVYVVGMGGLGKTTLATAVYEKI 223


>02_05_1010 +
           33477878-33478446,33478709-33478834,33478905-33479190,
           33479293-33479484,33479641-33479870,33480379-33480718,
           33481673-33481789,33481940-33482014
          Length = 644

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 340 SHGDLLLELSCSHCFH 293
           +H D L EL C+HCFH
Sbjct: 337 AHNDELRELPCTHCFH 352


>03_05_0725 + 27155736-27155746,27155798-27155949,27156108-27158068,
            27159169-27159397,27159506-27159634,27159725-27159838,
            27160059-27160258,27160301-27160599,27160713-27160923,
            27161017-27161172,27161290-27161447,27161532-27161724,
            27162015-27162406,27162537-27162717,27162802-27163031,
            27163108-27163753,27163833-27163902,27163994-27164244
          Length = 1860

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +1

Query: 196  CTKIERFSFTANVWSATGQ*LFNIISAHKENINESNGNKKALVISL 333
            C K  R SFT N+W   G    ++    ++N N   G+KK L +SL
Sbjct: 1379 CFKSTRSSFTVNMWEIDG----SVRKGRRKNPN-IGGSKKNLEVSL 1419


>02_04_0114 +
           19879468-19880671,19882007-19882179,19882265-19882605,
           19882698-19882977,19883070-19883267,19883380-19883652
          Length = 822

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 516 PKSLIIFDEIHHMCPSVLDTIIPMLD 593
           P S+I+FDE+    PSV +  + +LD
Sbjct: 591 PYSVILFDEVEKADPSVFNVFLQLLD 616


>05_03_0281 +
           11560402-11560569,11561373-11561579,11562966-11563174,
           11563261-11563309,11563611-11563673,11563799-11565472
          Length = 789

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 156 LQYVASFKVSHLYHPLARTIADPTK 82
           L YV  F +SHL   +AR + DP K
Sbjct: 561 LSYVEQFGLSHLVPEMARLLPDPQK 585


>04_04_0316 - 24338774-24339367
          Length = 197

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 334 GDLLLELSCSHCFH*YSLCELR*Y*KVIDQWLTKHSL 224
           GD++  LSC H FH    C+       +D+WL +H L
Sbjct: 57  GDVVRTLSCGHVFH--KDCDYS-----VDKWLREHGL 86


>11_04_0310 + 16218439-16219383
          Length = 314

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +1

Query: 295 ESNGNKKALVISLHGWSGVGKNFASTMIAEAIYRKGMQS 411
           +S  +K   V+++HG+ G GK    + IA A+YRK  Q+
Sbjct: 194 KSQSHKNRGVLAIHGFGGGGK----STIAAALYRKHGQN 228


>03_05_0862 + 28353235-28354431
          Length = 398

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 386 ASAIIVEAKFLPTPDQPWRLI 324
           A+AI V+ +  P PD+PW L+
Sbjct: 37  AAAIFVDGRGRPRPDRPWLLL 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,136,603
Number of Sequences: 37544
Number of extensions: 282719
Number of successful extensions: 653
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)