Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0205
         (606 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    24   4.4  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    24   4.4  
AY017417-1|AAG54081.1|  383|Anopheles gambiae arrestin protein.        23   7.7  
AJ304409-1|CAC39103.2|  383|Anopheles gambiae arrestin protein.        23   7.7  

>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = -2

Query: 248 PVADQTFAVKENLSIFVHQKVCDNHYNIL*IYNMWHPLKYPIYTIR 111
           PVA+++  ++    + + Q +  +  N L I N+W  L++  Y +R
Sbjct: 41  PVANESDPLEVKFGLTLQQIIDVDEKNQLLITNIWLSLEWNDYNLR 86


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = +3

Query: 105  LLADGINGIL*RMPHIVNLQNVVMIITYLLMYKN*EILFHSECLVSHWSMTFQYYL 272
            +L  G N +   + H    +    ++ YL M      +F SECL+  +++ + Y++
Sbjct: 1630 MLFIGFNMLTMTLDHYKQSETFSAVLDYLNMIFI--CIFSSECLMKIFALRYHYFI 1683


>AY017417-1|AAG54081.1|  383|Anopheles gambiae arrestin protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 388 IYRKGMQSNYVKLFMGKKDF 447
           +++K   +  V L+MGK+DF
Sbjct: 7   VFKKCAPNGKVTLYMGKRDF 26


>AJ304409-1|CAC39103.2|  383|Anopheles gambiae arrestin protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 388 IYRKGMQSNYVKLFMGKKDF 447
           +++K   +  V L+MGK+DF
Sbjct: 7   VFKKCAPNGKVTLYMGKRDF 26


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 634,054
Number of Sequences: 2352
Number of extensions: 12103
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 58870980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)