Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0205
         (606 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   1.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.4  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 567 ALMDTCDVSHQR*SEIW 517
           A+M  CD+ H R ++IW
Sbjct: 212 AVMKMCDILHLRHTKIW 228


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = -1

Query: 45  NIIKYIPIKY 16
           NIIK++P+KY
Sbjct: 510 NIIKFVPVKY 519


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = -1

Query: 45  NIIKYIPIKY 16
           NIIK++P+KY
Sbjct: 563 NIIKFVPVKY 572


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 591 RALVLLYQALMDTCDVSHQR 532
           R L  + QA +DTCD +  +
Sbjct: 177 RLLATVVQAHLDTCDFTRDK 196


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/36 (25%), Positives = 15/36 (41%)
 Frame = +3

Query: 234 LVSHWSMTFQYYLSSQREY**KQWEQESSSNKSPWL 341
           L+ HWS   Q+ +   + +    W   +    S WL
Sbjct: 288 LIGHWSGCLQFLVPMLQGFPSNSWVAINELQDSFWL 323


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/36 (25%), Positives = 15/36 (41%)
 Frame = +3

Query: 234 LVSHWSMTFQYYLSSQREY**KQWEQESSSNKSPWL 341
           L+ HWS   Q+ +   + +    W   +    S WL
Sbjct: 256 LIGHWSGCLQFLVPMLQGFPSNSWVAINELQDSFWL 291


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 71   ITISLVGSAIVLASG 115
            +T  L G  IVLASG
Sbjct: 1196 VTAQLAGKPIVLASG 1210


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,764
Number of Sequences: 438
Number of extensions: 3447
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)