Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0205
         (606 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32820.1 68417.m04668 expressed protein ; expression supporte...    28   4.2  
At4g29890.1 68417.m04253 choline monooxygenase, putative (CMO-li...    27   9.6  
At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP1...    27   9.6  

>At4g32820.1 68417.m04668 expressed protein ; expression supported by
            MPSS
          Length = 1817

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 196  CTKIERFSFTANVWSATGQ*LFNIISAHKENINESNGNKKALVISL 333
            C K  R SFT N+W   G     ++   +       GNKKAL ++L
Sbjct: 1380 CFKSSRSSFTINMWEIDG-----MVKKGRRKTPGLAGNKKALEVNL 1420


>At4g29890.1 68417.m04253 choline monooxygenase, putative (CMO-like)
           similar to Choline monooxygenase, chloroplast precursor
           (EC 1.14.15.7) from {Amaranthus tricolor} SP|Q93XE1,
           {Beta vulgaris} SP|O22553; contains Pfam Rieske [2Fe-2S]
           domain PF00355
          Length = 422

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 262 NIISAHKENINESNGNKKALVISLHGWS 345
           N+ S H   +   NG K   V   HGW+
Sbjct: 136 NVCSHHASILASGNGRKSCFVCLYHGWT 163


>At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP100,
           putative / heat shock protein clpB, putative /
           HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
           [Phaseolus lunatus]
          Length = 964

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 516 PKSLIIFDEIHHMCPSVLDTIIPMLD 593
           P S+++FDEI    P V + ++ +LD
Sbjct: 755 PYSVVLFDEIEKAHPDVFNILLQLLD 780


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,866,451
Number of Sequences: 28952
Number of extensions: 252412
Number of successful extensions: 562
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)