Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0204
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    31   0.092
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    29   0.37 
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    26   2.6  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    25   3.5  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   4.6  
SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein Bqt1|Sc...    24   8.0  
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    24   8.0  

>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 30.7 bits (66), Expect = 0.092
 Identities = 19/60 (31%), Positives = 35/60 (58%)
 Frame = -3

Query: 359 NGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSDG*VLLLDQNQSTEGLASEVVNFDES 180
           N  IY+ +F  ++S++ + + I  L   +RT++SD  V L D+ Q  +  +S ++N D S
Sbjct: 14  NTQIYRIFFTLTFSLSNLFLAICYLFLNVRTVSSDSSVSLYDR-QLFDQSSSVILNPDTS 72


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 28.7 bits (61), Expect = 0.37
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -1

Query: 124 CLINFRW*F---LRLPWLSRVTGNQGSIPEREPEKRLP 20
           C+IN  W     LRL +L +   NQ S  E++ EKR+P
Sbjct: 271 CMINETWPVDRALRLQFLIQQRNNQSSNEEQKQEKRVP 308


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 11  PWMW*PFLRLPLRNRTLIPRYP*QPW*SQKLPS 109
           P MW      P  N+ +   YP +PW S+ LPS
Sbjct: 236 PSMWPELSTFPDWNKFIFHEYPPKPW-SEILPS 267


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 13  LDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 114
           L ++  S+   P + PD P   T+  V+ TT+E+
Sbjct: 422 LGLINTSEINQPANLPDEPTAETSNPVSATTVEA 455


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -3

Query: 317  VTWITVVILELIHAIRTLTSDG*VLLLDQNQSTEGLASEVVN 192
            + W T V      AI  L   G   LL +N S E L  +V+N
Sbjct: 1132 LNWFTAVFGSPSKAIVGLARKGLTALLLENSSNEVLLQKVIN 1173


>SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein
           Bqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = -1

Query: 169 CRSHGQVPATHLSNVCLINFRW*FLRLPWLSRVTGNQ 59
           C+   +    H+      NF+  +  LPW  R+ G Q
Sbjct: 71  CQGQNKESLIHMEEDASTNFKLRYYVLPWSRRLQGYQ 107


>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 127 HLKDASPVLDHAICKSYPDSSKLTTSDAR 213
           HL+D S    H++ KS    + L TSD R
Sbjct: 211 HLQDVSSPSAHSLEKSLHKPASLQTSDKR 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,700,020
Number of Sequences: 5004
Number of extensions: 31663
Number of successful extensions: 69
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)