Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0204
         (412 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   7e-06
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   3e-04
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.023
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)                28   3.4  
SB_48654| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_31683| Best HMM Match : ApoC-I (HMM E-Value=1.8)                    27   6.0  
SB_24480| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.0  
SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 46.8 bits (106), Expect = 7e-06
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = +1

Query: 16  DVVAVSQAPSPESNPDSPLPVTTM 87
           DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128


>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = +1

Query: 25  AVSQAPSPESNPDSPLPVTTM 87
           AVSQAPSPESNP+SP PV TM
Sbjct: 52  AVSQAPSPESNPNSPSPVVTM 72


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 35.1 bits (77), Expect = 0.023
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +2

Query: 26  PFLRLPLRNRTLIPRYP 76
           PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240


>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
          Length = 441

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 7   PSLDVVAVSQAPSPESNPDSPLP 75
           P+ DV+A  Q P P S  D PLP
Sbjct: 75  PAEDVMAAHQEPKPTSAIDQPLP 97


>SB_48654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 67  GNQGSIPEREPEKRLPHPRKAA 2
           GN+GS  + E EK LP P K A
Sbjct: 52  GNEGSEGDGEKEKMLPSPEKKA 73


>SB_31683| Best HMM Match : ApoC-I (HMM E-Value=1.8)
          Length = 804

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 308 ITVVILELIHAIRTLTSDG*VLLLDQNQSTEGL 210
           I  V+ E++H I    ++G VL LD+N+++  L
Sbjct: 152 IARVVFEVVHRIYDRITEGFVLALDENKNSSQL 184


>SB_24480| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -3

Query: 368 DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSDG 252
           D  NG+I  F    +    W   + LE IH + TL  DG
Sbjct: 263 DFGNGTISSFTGNITRFNVWTLYISLEFIHNMATLVEDG 301


>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 180  WITFADRMVKYRRRIFQM 127
            W TF DR +KY R +F++
Sbjct: 1014 WFTFKDRQLKYYRGVFKV 1031


>SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 7   PSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI 108
           P   ++     P P++ P  P P TTM    TTI
Sbjct: 438 PPPSIIPPPTTPLPQTVPTPPRPPTTMTTILTTI 471


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,917,930
Number of Sequences: 59808
Number of extensions: 239523
Number of successful extensions: 698
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)