Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0204
         (412 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-1481|AAN12009.1|  804|Drosophila melanogaster CG32353-P...    28   4.2  
AE013599-527|AAF59178.2|  897|Drosophila melanogaster CG30377-PA...    27   7.3  
AJ132670-1|CAA10727.1|  158|Drosophila melanogaster homeodomain ...    27   9.7  

>AE014296-1481|AAN12009.1|  804|Drosophila melanogaster CG32353-PA
           protein.
          Length = 804

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 173 VIQIHQN*RLRTRGPPSIGFDL 238
           ++QI  N +  TR PPSIG DL
Sbjct: 353 IVQIRDNIQAETRRPPSIGGDL 374


>AE013599-527|AAF59178.2|  897|Drosophila melanogaster CG30377-PA
           protein.
          Length = 897

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 20/60 (33%), Positives = 26/60 (43%)
 Frame = +1

Query: 31  SQAPSPESNPDSPLPVTTMVVAETTIES**GRHLKDASPVLDHAICKSYPDSSKLTTSDA 210
           S  PSP S P   L      +A TTI +   R+L    P+L  A+  S P    +T   A
Sbjct: 714 SATPSPASTPQLELEALHPGLATTTIVTQMQRNLTFHKPIL--AVSNSNPGGGNVTVDGA 771


>AJ132670-1|CAA10727.1|  158|Drosophila melanogaster homeodomain
           protein protein.
          Length = 158

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +1

Query: 136 DASPVLDHAICKSYPDSSKLTTSDARPSVDWF*SNKS----THPSLVRVLIACISSR 294
           D S V DH+   SY D +KL T+    + D +  N++     HPS    L A  S+R
Sbjct: 31  DCSYVYDHSASSSYADYNKLETNWCTEANDQWLQNEAPAGQEHPSQRPKLRAISSNR 87


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,524,754
Number of Sequences: 53049
Number of extensions: 352034
Number of successful extensions: 907
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1209331668
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)