Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0204
         (412 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    28   3.0  
AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical ...    28   3.0  
Z72507-8|CAA96632.1| 1101|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AC006810-8|AAK84621.1|  364|Caenorhabditis elegans Hypothetical ...    27   5.3  
Z79752-4|CAB02083.1| 1188|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p...    27   7.0  
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    27   7.0  
Z66494-3|CAA91258.2|  520|Caenorhabditis elegans Hypothetical pr...    26   9.2  
U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical pr...    26   9.2  

>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 4   LPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI 108
           +P+  V+  ++ PS +S     + VTT  V+ TTI
Sbjct: 559 VPTTTVIQTTETPSTKSKTTKKVKVTTTTVSTTTI 593


>AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical
           protein E04A4.6 protein.
          Length = 466

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 368 DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTL 264
           D+  G++   WF +++SV WI +V+   I   +T+
Sbjct: 224 DSLPGNVDNNWFEQTFSVYWIPLVVASEIETNQTV 258


>Z72507-8|CAA96632.1| 1101|Caenorhabditis elegans Hypothetical
           protein F17C11.10 protein.
          Length = 1101

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 132 ERCVAGT*PCDLQKLSRFIKINDFG 206
           ER V+ + P DL    RF+K N FG
Sbjct: 440 ERFVSNSSPMDLDATQRFLKYNRFG 464


>AC006810-8|AAK84621.1|  364|Caenorhabditis elegans Hypothetical
           protein Y5H2B.1 protein.
          Length = 364

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -1

Query: 202 KSLILMNLDNFCRSHGQVPATHLSNVCLINFRW*FLRLPWLS 77
           K L + N   +C    +V    ++ +C+I F W F +L +++
Sbjct: 8   KFLTINNFSRYCLKIVKVHIIWITIICIIYFNWRFKKLDFMA 49


>Z79752-4|CAB02083.1| 1188|Caenorhabditis elegans Hypothetical
           protein D2005.4 protein.
          Length = 1188

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 341 TDILSHSRYRLNTACTETC 397
           T++L H+R+ L  AC E C
Sbjct: 245 TEVLKHARFCLGLACCERC 263


>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
           protein F40G12.3 protein.
          Length = 1099

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -3

Query: 296 ILELIHAIRTLTSDG*VLLLDQNQSTEGLASEVVNFD 186
           +L++I A+ T   D    L D+NQ+   + SEV++++
Sbjct: 97  LLQVIPALSTPVGDDCSWLSDKNQTYHAILSEVISYN 133


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
           on autosome protein2 protein.
          Length = 1758

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +1

Query: 7   PSLDVVAVSQAPSP-ESNPDSPLPVT-TMVVAETTI 108
           P+  ++  SQAP P ++ P SP+  T T+   +TT+
Sbjct: 774 PATPMLQASQAPQPLQAPPQSPMETTATVTYTKTTV 809


>Z66494-3|CAA91258.2|  520|Caenorhabditis elegans Hypothetical
           protein C34C6.3 protein.
          Length = 520

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 326 SYSVTWITVVILELIHAIRTLTSDG 252
           SY+V+WIT       + IR + SDG
Sbjct: 54  SYNVSWITPAASNSTYRIRLIDSDG 78


>U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical protein
            ZK430.5 protein.
          Length = 1276

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 232  KTNRRRASRPKSLILMNLDNFCRSHG 155
            K N +R +R + L++  + NFC+ HG
Sbjct: 1229 KDNLKR-TRKRKLLVSTIPNFCKEHG 1253


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,348,056
Number of Sequences: 27780
Number of extensions: 175291
Number of successful extensions: 560
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)