Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0204
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    27   0.083
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   0.77 
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    20   9.5  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    20   9.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   9.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   9.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   9.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   9.5  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    20   9.5  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            20   9.5  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 27.1 bits (57), Expect = 0.083
 Identities = 24/68 (35%), Positives = 33/68 (48%)
 Frame = -3

Query: 395 MSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSDG*VLLLDQNQSTE 216
           M  C P   DT    +Y+F   R Y +   T VI  +   + TLT    VL LD ++STE
Sbjct: 230 MYACCP--NDTYPMIVYEFSISRHYGILHATYVIPAVTMMLLTLT----VLWLD-SRSTE 282

Query: 215 GLASEVVN 192
            + +  VN
Sbjct: 283 RMIAASVN 290


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 0.77
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 205 PKSLILMNLDNFCRSHGQVPAT 140
           P+ L  +NL + CR HG  PAT
Sbjct: 430 PRELEAVNLGSACRIHGS-PAT 450


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 389 QCKPY*GDTANGSIYQFWFLRSY 321
           +C  Y  D +   +YQ++ LR Y
Sbjct: 140 RCLHYTVDKSKPKVYQWFDLRKY 162


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 389 QCKPY*GDTANGSIYQFWFLRSY 321
           +C  Y  D +   +YQ++ LR Y
Sbjct: 145 RCLHYTVDKSKPKVYQWFDLRKY 167


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 13  LDVVAVSQAPSPESNP 60
           ++V+ +S  P P  NP
Sbjct: 365 IEVIPLSAIPEPSKNP 380


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 14  WMW*PFLRLPLRNRTLI 64
           W+W PF+     NR  I
Sbjct: 72  WLWTPFIERGPANRMYI 88


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 375 LRRYREWLNISVLVP*ILLSYL 310
           LRR   +  ++++VP + +SYL
Sbjct: 231 LRRKTLFYTVNLIVPCVSISYL 252


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 46  PESNPDSPLP 75
           P SNP SP+P
Sbjct: 438 PSSNPVSPVP 447


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 389 QCKPY*GDTANGSIYQFWFLRSY 321
           +C  Y  D +   +YQ++ LR Y
Sbjct: 145 RCLHYTVDKSKPKVYQWFDLRKY 167


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 300 GNSRANTCN 274
           GNSRANT N
Sbjct: 131 GNSRANTYN 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,915
Number of Sequences: 438
Number of extensions: 2051
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)