Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0201
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    29   0.54 
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    29   0.94 
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    27   2.2  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    27   2.9  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    25   8.8  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    25   8.8  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      25   8.8  

>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +2

Query: 188 SRVTGNQGSIPEREPEKRLPHPRRQQARKLPTPGTGGSDEK*RYGTLTRPRNR 346
           SR++     IP+R  + R   PRR++     + G G  D +  YG+  RPR R
Sbjct: 5   SRLSSGSSRIPKRHRDYRDEEPRRERG----SGGIGREDPRGHYGS-ERPRRR 52


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +2

Query: 143 CLINFRW*F---LRLPWLSRVTGNQGSIPEREPEKRLP 247
           C+IN  W     LRL +L +   NQ S  E++ EKR+P
Sbjct: 271 CMINETWPVDRALRLQFLIQQRNNQSSNEEQKQEKRVP 308


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 267 RANYPLPAREVVTKNNDT 320
           +AN P+P  EVVT+NN T
Sbjct: 199 KANIPVPTSEVVTENNVT 216


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -2

Query: 293 PCREWVICAPAAF-LDVVAVSQAPSPESNPDSPLPVTT 183
           P +  V+  PAA  + V++V+ +P+P +  + P PV+T
Sbjct: 161 PHKAGVVSNPAAANVHVLSVAASPNPSTPSNGPAPVST 198


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = -2

Query: 347 SDYEAS*ESRIVIFRHYLPCREWVICAPAAFLDVVAVSQAPSPESNPDSPLPVTTMVVAE 168
           SD  +  ++ +  + H  P    ++C    FLD++A    P  ESN +  LPV ++  + 
Sbjct: 300 SDQYSFHDAYLQSYTHRYPVHRAIMCRCEYFLDMLA---GPFLESNQE--LPVLSLPFSS 354

Query: 167 TTIE 156
           + +E
Sbjct: 355 SVVE 358


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 254 LDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 153
           L ++  S+   P + PD P   T+  V+ TT+E+
Sbjct: 422 LGLINTSEINQPANLPDEPTAETSNPVSATTVEA 455


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 302 HYLPCREWVICAPA 261
           HY+PC+ W++  P+
Sbjct: 455 HYIPCQSWLVWYPS 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,069,751
Number of Sequences: 5004
Number of extensions: 62534
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)