Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0201
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0214 + 18067945-18068463,18068940-18069839,18069918-18070652     31   0.98 
02_05_0315 - 27822379-27823899                                         30   2.3  
10_06_0008 - 9533424-9533475,9533526-9535344,9535599-9536364,955...    29   4.0  
10_07_0135 + 13308839-13308899,13310146-13310495,13310574-133107...    29   5.2  
08_02_0526 + 18184146-18184168,18184247-18184438,18184846-181849...    29   5.2  
08_01_1002 + 10171942-10172859,10173369-10173452                       28   9.2  
01_05_0005 - 16886553-16886946,16887079-16887404                       28   9.2  

>06_03_0214 + 18067945-18068463,18068940-18069839,18069918-18070652
          Length = 717

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 224 REPEKRLPHPRRQQARKLPTPGTGGSD 304
           R  E + P PRRQQ +  P P  GG D
Sbjct: 495 RHFEDKCPKPRRQQGQAPPRPNNGGKD 521


>02_05_0315 - 27822379-27823899
          Length = 506

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = -2

Query: 293 PCREWVICAPAAFLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIE 156
           PCR W I  P A LD V V + P P       L   T+++ E  IE
Sbjct: 451 PCR-WKIADPDALLDTVVVLKKPDPGLWDRVILTDLTLMIYEQRIE 495


>10_06_0008 -
           9533424-9533475,9533526-9535344,9535599-9536364,
           9551969-9552097
          Length = 921

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 239 RLPHPRRQQARKLPTPGTGGSD 304
           + P PRRQQ +  P P  GG D
Sbjct: 664 KCPKPRRQQGQAPPRPNNGGKD 685


>10_07_0135 +
           13308839-13308899,13310146-13310495,13310574-13310709,
           13310806-13310942,13311041-13311164,13313393-13313871
          Length = 428

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 188 SRVTGNQGSIPEREPEKRLPHPRRQQARKLPTPGTG 295
           +R   + GS+P R P +  P PRR  A   P P  G
Sbjct: 382 TRRRSSSGSVP-RSPMRMQPSPRRLSASASPLPAAG 416


>08_02_0526 +
           18184146-18184168,18184247-18184438,18184846-18184954,
           18185071-18185220,18185973-18186136,18186273-18186359,
           18187083-18187137,18187911-18188333
          Length = 400

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 212 SIPEREPEKRLPHPRRQQARKLPTPGT-GGSDEK*RYGTLTRPRNRNEYTLNILTR 376
           S P ++ + R P PRR+   + P P   G S  + R   L  P N N Y   + TR
Sbjct: 39  SPPPKKSDSRSPPPRRRSTSRSPRPRRHGRSRSRSRDDDLRNPGN-NLYVTGLSTR 93


>08_01_1002 + 10171942-10172859,10173369-10173452
          Length = 333

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
 Frame = +2

Query: 50  RASRPKSLILMN--LDNFCRSHGQVPATHLSNVCLINF--RW*FLRLPWL-SRVTGNQGS 214
           RA +  SL L    +DN CR  G++P  + +N+ +  F     FL   WL SRV   + S
Sbjct: 242 RAPKLHSLTLWTPAVDNGCRVAGELPLLNAANISVDAFLGTEDFLDTLWLVSRVKVLKFS 301

Query: 215 IPEREPEK 238
           + +RE  K
Sbjct: 302 VRDRENRK 309


>01_05_0005 - 16886553-16886946,16887079-16887404
          Length = 239

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 451 RNNFSIRYWSWNYRGC 404
           R+N S RYW W   GC
Sbjct: 90  RSNSSFRYWRWQPHGC 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,720,897
Number of Sequences: 37544
Number of extensions: 452147
Number of successful extensions: 1178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)