Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0201
         (753 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   7e-04
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.015
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.062
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.76 
SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   2.3  
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)            30   2.3  
SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2)                    29   3.1  
SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)                     29   4.1  
SB_12992| Best HMM Match : LIM (HMM E-Value=0.16)                      29   5.4  
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_32472| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-08)                 29   5.4  
SB_28647| Best HMM Match : Ribosomal_L36 (HMM E-Value=1)               29   5.4  
SB_8850| Best HMM Match : LIM (HMM E-Value=0.51)                       29   5.4  
SB_5396| Best HMM Match : DEAD (HMM E-Value=0.73)                      28   7.1  
SB_48654| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_44664| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_41497| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_28536| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_26838| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 25/44 (56%), Positives = 29/44 (65%)
 Frame = -2

Query: 311 IFRHYLPCREWVICAPAAFLDVVAVSQAPSPESNPDSPLPVTTM 180
           +F H L  +      P  + DVVAVSQAPSPESNP+SP PV TM
Sbjct: 85  VFVHRLHNKHATKPKPIKYWDVVAVSQAPSPESNPNSPSPVVTM 128


>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 20/29 (68%), Positives = 21/29 (72%)
 Frame = -2

Query: 266 PAAFLDVVAVSQAPSPESNPDSPLPVTTM 180
           P   L   AVSQAPSPESNP+SP PV TM
Sbjct: 44  PHMLLKGRAVSQAPSPESNPNSPSPVVTM 72


>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 22/59 (37%), Positives = 29/59 (49%)
 Frame = +2

Query: 323 TLTRPRNRNEYTLNILTRNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 499
           T  +   R    ++++ R +WRASL            Y K+VAVKKLVV F    VG P
Sbjct: 44  TCQQTTTRVHAAMHLVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 102


>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 20/42 (47%), Positives = 22/42 (52%)
 Frame = +2

Query: 374 RNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 499
           R +WRASL            Y K+VAVKKLVV F    VG P
Sbjct: 14  RIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 55


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 35.1 bits (77), Expect = 0.062
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = -3

Query: 241 PFLRLPLRNRTLIPRYP 191
           PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240


>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 18/38 (47%), Positives = 19/38 (50%)
 Frame = +2

Query: 386 RASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 499
           RASL            Y K+VAVKKLVV F    VG P
Sbjct: 5   RASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 42


>SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/42 (42%), Positives = 19/42 (45%)
 Frame = +2

Query: 374 RNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 499
           R    ASL            Y K+VAVKKLVV F    VG P
Sbjct: 24  RERRAASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 65


>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
          Length = 203

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 526 RKRVSIPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNYRGCWH 398
           ++R+ I  + C    A  C   +  RN   +RYW W  R C H
Sbjct: 75  KRRLIIATLFCVVFIA--CEVTVIARNILPVRYWIWLSRKCGH 115


>SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2)
          Length = 111

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +2

Query: 434 YTKIVAVKKLVVAFVRRAVGAP 499
           Y K+VAVKKLVV F    VG P
Sbjct: 88  YIKVVAVKKLVVGFRDGTVGPP 109


>SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +2

Query: 434 YTKIVAVKKLVVAFVRRAVGAP 499
           Y K+VAVKKLVV F    VG P
Sbjct: 89  YIKVVAVKKLVVGFRDGTVGPP 110


>SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 40

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +2

Query: 434 YTKIVAVKKLVVAFVRRAVGAP 499
           Y K+VAVKKLVV F    VG P
Sbjct: 17  YIKVVAVKKLVVGFRDGTVGPP 38


>SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)
          Length = 1072

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 179 PWLSRVTGNQGSIPEREPEKRLPHPRRQQARKLPTPGTG-GSDEK 310
           P  ++ + NQ   PE E E+  P P + +    P P  G G+ EK
Sbjct: 460 PSSAQPSANQSPEPEEEKEEASPVPSKDEEETSPMPAKGEGTPEK 504


>SB_12992| Best HMM Match : LIM (HMM E-Value=0.16)
          Length = 411

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 227 EPEKRLPHPRRQQARKLPTPGTGG 298
           +P+  +  P R+Q R +P PG GG
Sbjct: 194 DPDPSVAQPYRKQGRPVPVPGKGG 217


>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1572

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 218 PEREPEKRLPHPRRQQARKLPTPGTG 295
           P   P + +PHPR +   ++P PG G
Sbjct: 297 PGYPPPQYMPHPRMRPPTRIPPPGMG 322


>SB_32472| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-08)
          Length = 289

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -3

Query: 559 FFRTPAHRRYVRKRVSIPRMR 497
           FFR+P  RRYVRKR   P  R
Sbjct: 266 FFRSPMLRRYVRKRFVRPATR 286


>SB_28647| Best HMM Match : Ribosomal_L36 (HMM E-Value=1)
          Length = 812

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 197 TGNQGSI-PEREPEKRLPHPRRQQARKLPTPGTGGSDEK*RYGTLTRPRNRNEY 355
           T  +GSI  +R+    +   +RQ  R+ P+  TGG+  + R  T++  R + +Y
Sbjct: 167 TETRGSIHQQRQKAISISKGKRQDKRQYPSAKTGGNIHQQRQETVSISRGKRQY 220


>SB_8850| Best HMM Match : LIM (HMM E-Value=0.51)
          Length = 1039

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 227 EPEKRLPHPRRQQARKLPTPGTGG 298
           +P+  + H  R+Q R +P PG GG
Sbjct: 840 DPDPSIAHRYRKQGRPVPVPGKGG 863


>SB_5396| Best HMM Match : DEAD (HMM E-Value=0.73)
          Length = 1017

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 227  EPEKRLPHPRRQQARKLPTPGTGG 298
            +P+  + H  R+Q R +P PG GG
Sbjct: 945  DPDPSVAHRYRKQGRPVPVPGKGG 968


>SB_48654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 200 GNQGSIPEREPEKRLPHPRRQQARKLP 280
           GN+GS  + E EK LP P ++  R  P
Sbjct: 52  GNEGSEGDGEKEKMLPSPEKKAKRTSP 78


>SB_44664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 227 EPEKRLPHPRRQQARKLPTPGTGGSDEK*RYGTLTR 334
           +PE  + H  R Q R +P PG  G       GT+ +
Sbjct: 267 DPESSIAHRYRTQGRPMPVPGKHGKTANAYKGTVVQ 302


>SB_41497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 792

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 227 EPEKRLPHPRRQQARKLPTPGTGGSDEK*RYGTLTR 334
           +PE  + H  R Q R +P PG  G       GT+ +
Sbjct: 605 DPESSIAHRYRTQGRPMPVPGKHGKTANAYKGTVVQ 640


>SB_28536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 224 REPEKRLPHPRRQQARKLPTPGTGGSDEK*RYGTL 328
           R PE+    P   +  +  T GTG  DEK R  T+
Sbjct: 136 RGPERTCTEPPGPETERCTTAGTGNPDEKLRIETI 170


>SB_26838| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 227 EPEKRLPHPRRQQARKLPTPGTGGSDEK*RYGTLTR 334
           +PE  + H  R Q R +P PG  G       GT+ +
Sbjct: 153 DPESSIAHRYRTQGRPMPVPGKHGKTANAYKGTVVQ 188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,688,882
Number of Sequences: 59808
Number of extensions: 514157
Number of successful extensions: 1714
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1712
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)