Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0201
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    32   0.38 
U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like pr...    29   4.7  
U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like pr...    29   4.7  
U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like pr...    29   4.7  
AB023496-1|BAA97564.1|  793|Caenorhabditis elegans kinesin like ...    29   4.7  

>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 209 GSIPEREPEKRLPHPRRQQARKLPTPGTGGSDEK*RYGTLTRP 337
           G +P   P+ R+P P   Q    P+   G + ++ RYGT   P
Sbjct: 816 GPVPPGPPQNRMPPPPPAQGAPSPSGAAGSNGKQPRYGTPAPP 858


>U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like protein
            protein 4,isoform c protein.
          Length = 1576

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 615  PTSTLTEEHRDRILILNRRFLERRLTDDMSANVSVSRGCGAPTAR 481
            PT+ + E  RD  +++   F+E    D +S  V   R CG P  R
Sbjct: 982  PTTVIFEHQRDFNVMVTEEFMEYVRDDALSIEVWGHRICGHPEER 1026


>U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like protein
            protein 4,isoform b protein.
          Length = 1610

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 615  PTSTLTEEHRDRILILNRRFLERRLTDDMSANVSVSRGCGAPTAR 481
            PT+ + E  RD  +++   F+E    D +S  V   R CG P  R
Sbjct: 982  PTTVIFEHQRDFNVMVTEEFMEYVRDDALSIEVWGHRICGHPEER 1026


>U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like protein
            protein 4,isoform a protein.
          Length = 1595

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 615  PTSTLTEEHRDRILILNRRFLERRLTDDMSANVSVSRGCGAPTAR 481
            PT+ + E  RD  +++   F+E    D +S  V   R CG P  R
Sbjct: 982  PTTVIFEHQRDFNVMVTEEFMEYVRDDALSIEVWGHRICGHPEER 1026


>AB023496-1|BAA97564.1|  793|Caenorhabditis elegans kinesin like
           protein KLP-4 protein.
          Length = 793

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 615 PTSTLTEEHRDRILILNRRFLERRLTDDMSANVSVSRGCGAPTAR 481
           PT+ + E  RD  +++   F+E    D +S  V   R CG P  R
Sbjct: 402 PTTVIFEHQRDFNVMVTEEFMEYVRDDALSIEVWGHRICGHPEER 446


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,367,544
Number of Sequences: 27780
Number of extensions: 374143
Number of successful extensions: 984
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)