Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0201
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.8  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    23   4.1  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    23   4.1  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    23   4.1  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    23   4.1  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    23   4.1  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 62  PKSLILMNLDNFCRSHGQVPAT 127
           P+ L  +NL + CR HG  PAT
Sbjct: 430 PRELEAVNLGSACRIHGS-PAT 450


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 254  RRQQARKLPTPGTGGSDE 307
            RR+Q RK  TPG   SDE
Sbjct: 1767 RRRQQRKQQTPGDVESDE 1784


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 254  RRQQARKLPTPGTGGSDE 307
            RR+Q RK  TPG   SDE
Sbjct: 1763 RRRQQRKQQTPGDVESDE 1780


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 535 RYVRKRVSIPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 413
           R  R+R   P++    S ++  NY  +N NN+    ++ NY
Sbjct: 70  RTERERSKEPKI--ISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 535 RYVRKRVSIPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 413
           R  R+R   P++    S ++  NY  +N NN+    ++ NY
Sbjct: 70  RTERERSKEPKI--ISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 535 RYVRKRVSIPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 413
           R  R+R   P++    S ++  NY  +N NN+    ++ NY
Sbjct: 70  RTERERSKEPKI--ISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 535 RYVRKRVSIPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 413
           R  R+R   P++    S ++  NY  +N NN+    ++ NY
Sbjct: 70  RTERERSKEPKI--ISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 535 RYVRKRVSIPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 413
           R  R+R   P++    S ++  NY  +N NN+    ++ NY
Sbjct: 70  RTERERSKEPKI--ISSLSNNYNYSNYNNNNYKQLCYNINY 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,966
Number of Sequences: 438
Number of extensions: 4898
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)