Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0200
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166...    30   1.7  
01_06_0333 + 28528413-28529364,28529504-28529539,28529800-28530872     27   9.2  
01_01_1049 + 8275837-8275859,8276428-8276503,8276545-8276634,827...    27   9.2  

>02_05_0110 +
           25914110-25915006,25915726-25915797,25916411-25916699,
           25916864-25916949,25917267-25917490,25917674-25917740,
           25917830-25917889,25917995-25918078,25918475-25918555
          Length = 619

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 454 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 353
           LDDE   YL  R  V   +  RLL+F++VD  STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313


>01_06_0333 + 28528413-28529364,28529504-28529539,28529800-28530872
          Length = 686

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +1

Query: 196 GRVGFVSCAIGTILYERRSTSAQNWHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQ 372
           G  G +    GT LY   + +  +  G G +  L    HCD P G   + ++A  + CQ
Sbjct: 39  GSEGTLGETCGTGLYAYVNLAFLSTFGAGRAPVLNLADHCDAPSGTCAS-LAADIASCQ 96


>01_01_1049 +
           8275837-8275859,8276428-8276503,8276545-8276634,
           8276721-8276836,8276918-8277017,8277808-8277879,
           8277954-8278001,8278093-8278170,8278272-8278391,
           8278496-8278601,8279574-8279737,8280403-8280537,
           8280766-8280896,8282016-8282094,8282284-8282373
          Length = 475

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 564 GSSFPADSPKPVP-LAVVSLIVDRDSGNLV 478
           G  FP D  +  P L +  LI+D+D GNLV
Sbjct: 49  GMGFPVDDLEFDPDLVIRGLIMDKDKGNLV 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,462,549
Number of Sequences: 37544
Number of extensions: 391853
Number of successful extensions: 1196
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)