Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0200
(625 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 1e-11
SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35) 63 2e-10
SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 7e-07
SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5) 47 1e-05
SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_58248| Best HMM Match : Pox_A32 (HMM E-Value=0.97) 29 3.1
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 29 3.1
SB_36990| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_53603| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_36343| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 66.9 bits (156), Expect = 1e-11
Identities = 32/39 (82%), Positives = 34/39 (87%)
Frame = -2
Query: 624 PTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSL 508
PTY+TPLMS + RLESSSTGSSFPAD KPVPLAVVSL
Sbjct: 89 PTYSTPLMSFHRVRLESSSTGSSFPADCAKPVPLAVVSL 127
>SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35)
Length = 521
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/35 (77%), Positives = 30/35 (85%)
Frame = -3
Query: 368 HSEHWAEITLRQHPRGPSQCFVLIRQSDSPCPCQF 264
++EHWAEITLRQH PSQCFVLI+QSDSP CQF
Sbjct: 48 NNEHWAEITLRQHRFRPSQCFVLIKQSDSPSHCQF 82
>SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 51.2 bits (117), Expect = 7e-07
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +1
Query: 439 MPRHLISDAHEWINEIPTVPI 501
MPRHLISDAHEWINEIPTVPI
Sbjct: 1 MPRHLISDAHEWINEIPTVPI 21
>SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5)
Length = 167
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = +2
Query: 356 SALNVNVKKFKQARVNGGSNYDSL 427
+ALNV VKKF QARVNGGSNYDSL
Sbjct: 28 AALNVKVKKFNQARVNGGSNYDSL 51
>SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = +2
Query: 359 ALNVNVKKFKQARVNGGSNYDSL 427
ALNV VKKF QARVNG SNYDSL
Sbjct: 2 ALNVKVKKFNQARVNGWSNYDSL 24
>SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = +2
Query: 353 PSALNVNVKKFKQARVNGGSNYDS 424
PSALNV VKKF QARVNGG +S
Sbjct: 31 PSALNVKVKKFNQARVNGGDPLES 54
>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1199
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -3
Query: 266 F*ADVERRSYRIVPIAHETKPTRPYG*EDPRKA-GERGSGSSPKRKT 129
F V R Y++VP++HE + R A +GSGSSP R T
Sbjct: 1036 FPLSVSGRCYKVVPLSHELCLVSKSLWNNRRSADNPKGSGSSPTRDT 1082
>SB_58248| Best HMM Match : Pox_A32 (HMM E-Value=0.97)
Length = 540
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +1
Query: 4 EADAAGAGSGRCSCVMFVLAS*YFNIMRPQ--KLYIFNMTLAKIVLRFGLDP 153
E +G+G +C MFV+A N+M Q + T ++ R G+DP
Sbjct: 160 EIKRTASGTGTVNCHMFVVADALMNLMNGQLESIQYLAHTPERVSARSGMDP 211
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +1
Query: 283 ESDCLIKTKHCDGPRGC*RNVISAQCSE 366
E DC+ +KHCDG C C E
Sbjct: 73 EGDCIPLSKHCDGTWDCQHGTDEMDCQE 100
>SB_36990| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -2
Query: 237 QNRADRARNETDTTLRLGRSAEGRRTRVR 151
+NRA RA + L+ R EGRRTR R
Sbjct: 52 ENRALRAHRKCGIILQAFRKFEGRRTRTR 80
>SB_53603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 456
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 501 LLSAKPQPRERAWENQRGKTTLLSLTLVWH 590
L S + P +R WEN + T SLT H
Sbjct: 348 LRSKELHPNQRTWENAKSATAKASLTATRH 377
>SB_36343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -2
Query: 624 PTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLIVD 499
PT P + Y +S TG +F AD P+ VP+ VS ++
Sbjct: 119 PTDDPPPLPDYVMVRFTSYTGPAFIADDPQVVPIVPVSRSIE 160
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,742,595
Number of Sequences: 59808
Number of extensions: 442070
Number of successful extensions: 1110
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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