Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0200
         (625 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X78202-1|CAA55038.1|  469|Homo sapiens HBF-G2 (HFK-2) protein.         30   5.8  
X74143-1|CAA52240.1|  469|Homo sapiens transcription factor prot...    30   5.8  
X03541-1|CAA27243.1|  641|Homo sapiens protein ( Human mRNA of t...    30   7.6  
AF091395-1|AAC43042.1| 3038|Homo sapiens Trio isoform protein.         30   7.6  
AB209754-1|BAD92991.1| 2202|Homo sapiens triple functional domai...    30   7.6  

>X78202-1|CAA55038.1|  469|Homo sapiens HBF-G2 (HFK-2) protein.
          Length = 469

 Score = 30.3 bits (65), Expect = 5.8
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = -3

Query: 338 RQHPRGPSQCFVLIRQSDSPCPCQF*ADVERRSYRIVPIAHETKPTRPYG*EDPRKAGER 159
           R+  RGPS C        +P   +  A  +RR   I P+  + K     G E+ + AGE 
Sbjct: 84  RRRRRGPSSCCSAAHAHGAPEGQRQLAQGDRRGRGICPVGPDEKEKARAGGEEKKGAGEG 143

Query: 158 G 156
           G
Sbjct: 144 G 144


>X74143-1|CAA52240.1|  469|Homo sapiens transcription factor
           protein.
          Length = 469

 Score = 30.3 bits (65), Expect = 5.8
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = -3

Query: 338 RQHPRGPSQCFVLIRQSDSPCPCQF*ADVERRSYRIVPIAHETKPTRPYG*EDPRKAGER 159
           R+  RGPS C        +P   +  A  +RR   I P+  + K     G E+ + AGE 
Sbjct: 84  RRRRRGPSSCCSAAHAHGAPEGQRQLAQGDRRGRGICPVGPDEKEKARAGGEEKKGAGEG 143

Query: 158 G 156
           G
Sbjct: 144 G 144


>X03541-1|CAA27243.1|  641|Homo sapiens protein ( Human mRNA of trk
           oncogene. ).
          Length = 641

 Score = 29.9 bits (64), Expect = 7.6
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
 Frame = +1

Query: 220 AIGTILYERRSTSAQNWHGQGES---DCLIKTKHCDGPRGC*RNVISAQCSECQREEIQA 390
           + G +L+E  +   Q W+    +   DC+ + +  + PR C   V +      QRE   A
Sbjct: 535 SFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPSNA 594

Query: 391 SAGKRRE*L*LS*GSQMPRHLISDAHEW 474
           +A +    +        PRHL+S    W
Sbjct: 595 TASR----MCTPGCKPWPRHLLSTWMSW 618


>AF091395-1|AAC43042.1| 3038|Homo sapiens Trio isoform protein.
          Length = 3038

 Score = 29.9 bits (64), Expect = 7.6
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 451  LISDAHEWINEIPTVPIYYQRNHSQGNGLGRISG 552
            ++ +   ++N + T PI YQRNHS G G G   G
Sbjct: 2210 ILENQRNFLNAL-TSPIEYQRNHSGGGGGGGSGG 2242


>AB209754-1|BAD92991.1| 2202|Homo sapiens triple functional domain
            (PTPRF interacting) variant protein.
          Length = 2202

 Score = 29.9 bits (64), Expect = 7.6
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 451  LISDAHEWINEIPTVPIYYQRNHSQGNGLGRISG 552
            ++ +   ++N + T PI YQRNHS G G G   G
Sbjct: 1908 ILENQRNFLNAL-TSPIEYQRNHSGGGGGGGSGG 1940


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,488,074
Number of Sequences: 237096
Number of extensions: 2063404
Number of successful extensions: 4445
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4442
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6747805200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)