Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0200
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81119-8|CAB03340.1|  504|Caenorhabditis elegans Hypothetical pr...    31   0.88 
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    29   2.0  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    29   2.0  
U97012-9|AAK39142.2|  995|Caenorhabditis elegans Hypothetical pr...    28   4.7  

>Z81119-8|CAB03340.1|  504|Caenorhabditis elegans Hypothetical
           protein T10H4.10 protein.
          Length = 504

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +3

Query: 114 DTRENRLTFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRTPFNVSSEL 269
           D    +L  R   G   +G   IF  VR    RF++ R D++  PFN   EL
Sbjct: 200 DPEFEKLVSRLAKGFENTGFLDIFCPVRILESRFLKWRQDTIFEPFNYILEL 251


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
           protein F29D11.1 protein.
          Length = 4753

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +1

Query: 268 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 399
           W+  G   C+ + K CDG + C       QCS+     +   AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
           receptor-related protein protein.
          Length = 4753

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +1

Query: 268 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 399
           W+  G   C+ + K CDG + C       QCS+     +   AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310


>U97012-9|AAK39142.2|  995|Caenorhabditis elegans Hypothetical
           protein C04E6.11 protein.
          Length = 995

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 491 LSLSTISETTAKGTGLGESAGKDDP-VELDSSLAL*GDMRGV 613
           L+L  IS  ++K + L  SA    P +E+DS L   GD RGV
Sbjct: 13  LTLHRISRFSSKISQLSISAATTFPSIEIDSKLVRRGDFRGV 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,764,323
Number of Sequences: 27780
Number of extensions: 303484
Number of successful extensions: 827
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)