Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0200
(625 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein. 25 0.79
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 3.2
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 3.2
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 22 4.2
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 22 4.2
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 22 4.2
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 22 4.2
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 22 4.2
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 22 4.2
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 22 4.2
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 21 7.4
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 21 7.4
DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein. 21 9.8
>AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein.
Length = 366
Score = 24.6 bits (51), Expect = 0.79
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -3
Query: 257 DVERRSYRIVPIAHETKP---TRPYG*EDPRKAGERGSGSS 144
DVE + Y+ V I+ T+P T+ Y E PR G+R SS
Sbjct: 182 DVEEQRYKQVEISQMTEPSSSTKSYVLEGPRN-GKRKRKSS 221
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 3.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 5 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 103
K +RPV DV +C ++S LI LKN I
Sbjct: 42 KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 3.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 5 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 103
K +RPV DV +C ++S LI LKN I
Sbjct: 42 KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 4.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 241 RTESCRSRTKRNRHD 197
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 4.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 241 RTESCRSRTKRNRHD 197
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 4.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 241 RTESCRSRTKRNRHD 197
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 4.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 241 RTESCRSRTKRNRHD 197
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 4.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 241 RTESCRSRTKRNRHD 197
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 22.2 bits (45), Expect = 4.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 241 RTESCRSRTKRNRHD 197
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 22.2 bits (45), Expect = 4.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 241 RTESCRSRTKRNRHD 197
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 21.4 bits (43), Expect = 7.4
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -1
Query: 265 SELTLNGVRTESCRSRTKRNRHDLTARKIRGRPENAGPDPVRNV 134
+ LTL+G S RN DL + G + PD +R++
Sbjct: 410 NRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSVPDALRDL 453
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.4 bits (43), Expect = 7.4
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 615 ATPLMSPYNARLESSSTGSSFP 550
A + SP + SSTGSS P
Sbjct: 347 AKQMASPEPPKSSESSTGSSIP 368
>DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein.
Length = 495
Score = 21.0 bits (42), Expect = 9.8
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 488 PLSLSTISETTAKGTGL 538
PLSL ETT GT L
Sbjct: 447 PLSLKNKVETTHSGTSL 463
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,294
Number of Sequences: 438
Number of extensions: 4286
Number of successful extensions: 18
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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