Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0200
         (625 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28990.1 68415.m03526 leucine-rich repeat protein kinase, put...    34   0.067
At1g60630.1 68414.m06825 leucine-rich repeat family protein simi...    30   1.4  
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /...    29   2.5  
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    29   3.3  
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    29   3.3  
At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative...    28   4.4  
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot...    28   5.8  
At3g17670.1 68416.m02256 ferredoxin-related contains Pfam PF0051...    27   7.7  

>At2g28990.1 68415.m03526 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 884

 Score = 34.3 bits (75), Expect = 0.067
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +3

Query: 135 TFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRTPFNVSSELARTRGIRLSN*NKAL 314
           T+ T SG       R++L+      R+  D HD + +PFN SS    T  + ++N N A 
Sbjct: 179 TYVTQSGSLMMSF-RVYLSNSDASIRYADDVHDRIWSPFNGSSHTHITTDLNINNSN-AY 236

Query: 315 RWPSRVL 335
             P  +L
Sbjct: 237 EIPKNIL 243


>At1g60630.1 68414.m06825 leucine-rich repeat family protein similar
           to receptor kinase GI:498278 from [Petunia
           integrifolia]; contains protein kinase domain,
           Pfam:PF00069; contains leucine-rich repeats,
           Pfam:PF00560
          Length = 652

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 23/86 (26%), Positives = 37/86 (43%)
 Frame = -2

Query: 582 LESSSTGSSFPADSPKPVPLAVVSLIVDRDSGNLVNPFMRVTN*MTRHLATLRES*LLPP 403
           L  ++    FP        L  V L  +R SG + +  +R++   T ++     S  +PP
Sbjct: 116 LNDNNFSGEFPESLTSLHRLKTVVLSRNRFSGKIPSSLLRLSRLYTFYVQDNLFSGSIPP 175

Query: 402 FTRACLNFFTLTFRALGRNHIASTPA 325
             +A L FF ++   L   HI  T A
Sbjct: 176 LNQATLRFFNVSNNQLS-GHIPPTQA 200


>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
           CAF identical to RNA helicase/RNAseIII CAF protein
           GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
          Length = 1909

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 430 GSQMPRHLISDAHEWINEIPTVPIYYQRNHSQGNGLGRISGER 558
           G  +P + +SD +  INE+   P    +   + NGL +  G+R
Sbjct: 70  GGGLPNNGVSDTNSQINEVTVTPQVIAKETVKENGLQKNGGKR 112


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -1

Query: 418 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 308
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 33  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -1

Query: 418 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 308
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 32  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68


>At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 239

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 159 RVRIQSET*DDFRECHIKYIQFLRPH 82
           R+RIQ     DF + + K+++FL PH
Sbjct: 172 RIRIQGFVVSDFYDEYSKFLEFLHPH 197


>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
           similar to SP|P22418 Fructose-1,6-bisphosphatase,
           chloroplast precursor (EC 3.1.3.11)
           (D-fructose-1,6-bisphosphate 1-phosphohydrolase)
           (FBPase) {Spinacia oleracea}; contains Pfam profile
           PF00316: fructose-1,6-bisphosphatase
          Length = 404

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 615 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 511
           A+ + SP+N+ L   S  SS  +D   P PL +VS
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVS 139


>At3g17670.1 68416.m02256 ferredoxin-related contains Pfam PF00515:
           TPR Domain; similar to ferredoxin PetF2 (GI:22651984)
           [Synechococcus sp. PCC 7002]
          Length = 366

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = +2

Query: 86  GLKNCIYLI*HSRKSSYVSDWIRTRVLRPSADLPSRKVVSVSFRARSARFCTNAVQRQ 259
           GL +C   +    ++S+   W    ++  S  LP+    S   + +  R CTN   R+
Sbjct: 104 GLSDCSRCLGTGERASFFFLWFDILIVMSSVALPAMSCRSSGEQVKEIRVCTNRTCRR 161


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,098,349
Number of Sequences: 28952
Number of extensions: 291355
Number of successful extensions: 797
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)