Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0199
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   6.7  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    25   6.7  
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    24   8.8  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    24   8.8  
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    24   8.8  

>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 270 RAAF*TPRF*GASFRRHPSAARGL-PPSTGKRPRSR 166
           R+AF   R+ G+   R+  + R L PP+T   PRSR
Sbjct: 78  RSAF-RSRYRGSLLNRNSPSLRSLSPPATPATPRSR 112


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -3

Query: 287 EFTTRLGLHSKHPDFKERPFGGTLP 213
           EF+    LH+ HP   + P+    P
Sbjct: 175 EFSRAYDLHNAHPSIHDAPYSSPFP 199


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 356 ISXQEPVMPMITNWSSVPI 300
           +S  +PV P+  N+SS+P+
Sbjct: 319 VSQTQPVNPITPNYSSIPL 337


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 135 KRNLPNTTSPVID*NNGIQCW 73
           +RN P+  +P+ D  N  Q W
Sbjct: 638 RRNAPDINNPIADFQNSFQNW 658


>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 377 EKCEANNISXQEPVMPMITNWSSV 306
           +K E NN+  + P++ + TN+ S+
Sbjct: 64  QKFEMNNVQKESPIVSVETNFDSL 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,888,949
Number of Sequences: 5004
Number of extensions: 38800
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)