Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0199
(436 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0362 + 28739969-28740232,28740336-28740452,28740560-287406... 29 2.2
05_04_0186 + 18866762-18866949,18867207-18867345,18868068-188682... 27 5.0
04_04_0910 - 29321128-29321276,29321977-29322508,29323301-293237... 27 5.0
02_02_0642 + 12585531-12586126,12586292-12586371,12586481-125865... 27 5.0
07_03_0856 - 22037345-22037665,22037962-22038108,22038201-220389... 27 6.6
02_04_0470 - 23183925-23184743,23184929-23185153 27 6.6
11_04_0301 + 16142236-16142945,16143748-16144247,16144557-161446... 27 8.7
07_01_0452 - 3418572-3418763,3419140-3419223 27 8.7
05_02_0021 - 5674587-5674799,5674898-5675031,5675129-5675207,567... 27 8.7
>01_06_0362 +
28739969-28740232,28740336-28740452,28740560-28740660,
28741251-28741322,28741433-28741514,28741607-28741687,
28742548-28742589,28743009-28743047,28743278-28743343,
28743444-28743590,28743638-28743652
Length = 341
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 40 SLVAASEQEYSPALNPVVLIDNGRCGVREVPL 135
S V +E+ Y+P+++PV+L D R G + V L
Sbjct: 185 SFVDKTEKRYNPSMSPVILKDKWRKGSQWVAL 216
>05_04_0186 +
18866762-18866949,18867207-18867345,18868068-18868295,
18869023-18869081,18869411-18869482,18870239-18870287,
18870431-18870661,18872018-18872187,18872274-18872478,
18872826-18873494,18873592-18873819,18873901-18874689
Length = 1008
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 273 TGGKLHLRVNGDRTPIRNHGHNWFLX*NVIRLT 371
TGG++ +VNG+ P+ G NW L ++RLT
Sbjct: 376 TGGRI-FKVNGE--PVFIRGGNWILSDGLLRLT 405
>04_04_0910 -
29321128-29321276,29321977-29322508,29323301-29323706,
29323933-29324028,29324563-29324645,29326620-29326732,
29327156-29327315
Length = 512
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 219 PSAARGLPPSTGKRPRSRRTWPGVVA 142
PSA R P + G+RPR WPG A
Sbjct: 336 PSARR--PSAVGRRPRVSVAWPGQTA 359
>02_02_0642 +
12585531-12586126,12586292-12586371,12586481-12586539,
12587190-12587462,12587876-12587914,12588086-12588231,
12589495-12589696
Length = 464
Score = 27.5 bits (58), Expect = 5.0
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +3
Query: 144 RRLLAKFVLNGGVFP*KVASP*PRKGAAERTLLKIGVFRMQP*TGGKLHLRVNGDRTPIR 323
R LL K ++ ++ P P + +L+ G R +P G+ H+ + +PI
Sbjct: 352 RTLLGKLTIDKHLYVRVFDEPVPTAPTTLQNILRQGHNR-EPSKCGRRHINRPNEFSPIS 410
Query: 324 NHGHNWFL 347
G++WFL
Sbjct: 411 CGGNSWFL 418
>07_03_0856 -
22037345-22037665,22037962-22038108,22038201-22038978,
22039092-22039384,22039663-22039758
Length = 544
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 207 RGLPPSTGKRPRSRRTWPGVVATRKRN 127
RGL + G R R+R PGV RK++
Sbjct: 11 RGLGKAAGARKRAREQHPGVAKLRKQH 37
>02_04_0470 - 23183925-23184743,23184929-23185153
Length = 347
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -2
Query: 228 RRHPSAARGLPPSTGKRPRSRRTWPGVVATRKRNLPNTTS 109
R P+ AR LPP R SR +W G TTS
Sbjct: 172 RWSPAKARALPPPPSLRYPSRSSWDGADLDGPTAASTTTS 211
>11_04_0301 +
16142236-16142945,16143748-16144247,16144557-16144649,
16144879-16145005,16145265-16145468,16145587-16145692
Length = 579
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -1
Query: 124 PEHHI---SRYRLKQRDSVLGYIPVRSPLLRKSWLVSFPPLTNM 2
PEHH R + V+G+ P P+L+++ ++ LTN+
Sbjct: 22 PEHHAVYSGRIVTLNKSGVVGHRPAPPPVLQEAQILDVDDLTNL 65
>07_01_0452 - 3418572-3418763,3419140-3419223
Length = 91
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -2
Query: 213 AARGLPPSTGKRPRSRRTWPGVVATRKRNLPNTTSPVID*NN 88
+ R L P T + R+ T+P K N P T P +D N
Sbjct: 18 STRSLFPRTAEASRNFNTFPSAHPKLKINCPTTGLPSVDHTN 59
>05_02_0021 -
5674587-5674799,5674898-5675031,5675129-5675207,
5675737-5675799,5676420-5676482,5676557-5676673,
5676756-5676803,5676918-5677103,5677948-5678047,
5678323-5678562,5678583-5678686
Length = 448
Score = 26.6 bits (56), Expect = 8.7
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Frame = -1
Query: 166 TNLARSRRDEKAEP----PEHHISRYRLKQRDSVLGYIPVRSP 50
T+ A+SR+D+K E P + IS R+ D +LG +PV++P
Sbjct: 300 TDTAKSRKDKKNEVMVGFPINLISGSRVV--DEILGRVPVKAP 340
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,642,497
Number of Sequences: 37544
Number of extensions: 313474
Number of successful extensions: 732
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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