Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0199
         (436 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   0.48 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.0  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   4.5  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   4.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   6.0  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   6.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.9  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.6 bits (51), Expect = 0.48
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 113 HLPLSIKTTGFSAGLYSCSLAATKE 39
           H PLS+K  G   GL    LA T +
Sbjct: 319 HTPLSVKFPGMGHGLQPPDLAGTSQ 343


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 291 DGVYHPFRAAF*TPRF*GASFRRHPSAARGLPPST 187
           + VY+P       P++  A F + PS A    PS+
Sbjct: 323 NAVYNPIVYGISHPKYRAALFAKFPSLACAAEPSS 357


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 107 PLSIKTTGFSAGLYSCSLAATKE 39
           P    TTGFS   Y C  +  KE
Sbjct: 79  PSVASTTGFSKECYCCRESYLKE 101


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 107 PLSIKTTGFSAGLYSCSLAATKE 39
           P    TTGFS   Y C  +  KE
Sbjct: 79  PSVASTTGFSKECYCCRESYLKE 101


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 157 ARSRRDEKAEPPEHHISRYRLKQRD 83
           A++ +D +   PE+  S YRL + D
Sbjct: 89  AQTWKDNRLRLPENMTSEYRLLEVD 113


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 127 PPEHHISRYRLKQRD 83
           PP+  IS YR  +RD
Sbjct: 127 PPQEVISHYRRTRRD 141


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 160 LARSRRDEKAEPPEHHISRYRLKQRD 83
           LA+S RD +   PE+    YR+   D
Sbjct: 57  LAQSWRDSRLRLPENMSEDYRILDVD 82


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 368 HISPHNISGSIKL*TLGGL 424
           H+  H+ +GS+ +  +GGL
Sbjct: 193 HVHFHDYTGSVVIHVVGGL 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,361
Number of Sequences: 438
Number of extensions: 2764
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)