Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0197
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    27   2.2  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    27   2.9  
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    26   6.7  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    26   6.7  

>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 150 SICAQSAPSFTDW-KRDASGVRKSRT*LDNFILPERTSSVRLHFRY 16
           ++C + +  + DW +R +SG+++  T  +  I  ER   +  HF Y
Sbjct: 861 ALCDKMSEIWADWVQRTSSGIQEEDTIPNEMIDEERMLDLEKHFMY 906


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 319  SWRRYKILKQSHPVKRMIRGIGAETTSTYSQ 411
            S + YK L Q + VK ++  + +ET S+Y++
Sbjct: 1082 SAKNYKSLIQKYKVKSVLSAVDSETASSYAK 1112


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 159 KDGELC-LVRSKSGETLMEDRSDSDVQIDRRNWYRGERLIEPSS 287
           K G+ C  + +K+G  L+  R          +WYR  R+I+P +
Sbjct: 446 KTGKSCGRINTKNGVELVYPRKYVSNGFSAEHWYRKGRIIKPGA 489


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 174 CLVRSKSGETLMEDRSDSDVQIDRRNWYRGERLIEPSSSWFRP-KFP 311
           C + SK  + L+ED         ++ W+  E ++    +W R  KFP
Sbjct: 96  CKLMSKRWKRLLEDPGIWKALYMQKGWFVNENVLNEFEAWRRTHKFP 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,213,068
Number of Sequences: 5004
Number of extensions: 69895
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)