Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0197
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             29   0.063
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.3  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    23   2.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.4  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    23   3.1  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   3.1  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    23   3.1  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    23   3.1  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   9.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 28.7 bits (61), Expect = 0.063
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 444  NDEAGDLMTVPSGPILVSRTGAWDE 518
            ND+  D +T P  P+ +SR G+ DE
Sbjct: 1387 NDDGSDRLTSPPTPLSISRAGSRDE 1411


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 629 CNDSPAEATSPENGW 673
           C D P E   PE+GW
Sbjct: 642 CRDIPEEFLRPESGW 656


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 261 PYTSSDDRFARQNRYGPPSGFP 196
           P+ S  ++  R    GPP+ FP
Sbjct: 364 PFVSIQEQIPRLRYIGPPTSFP 385


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -1

Query: 460 SPASSFE*AGVLTHLKFENRLRSFRPQCL*SFALPDETVLKFYIDASYPEGN 305
           S A+S E   + TH +  ++LR  R     S  L DE   K +  ++  EGN
Sbjct: 220 STAASDEDISLTTHQQKRHKLRVTRCYSSDSAVLSDEDQTKGWDGSNMVEGN 271


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 261 PYTSSDDRFARQNRYGPPSGFP 196
           P+ S  ++  R    GPP+ FP
Sbjct: 364 PFVSIQEQIPRFRYIGPPTSFP 385


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 261 PYTSSDDRFARQNRYGPPSGFP 196
           P+ S  ++  R    GPP+ FP
Sbjct: 364 PFVSIQEQIPRFRYIGPPTSFP 385


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 261 PYTSSDDRFARQNRYGPPSGFP 196
           P+ S  ++  R    GPP+ FP
Sbjct: 364 PFVSIQEQIPRFRYIGPPTSFP 385


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 261 PYTSSDDRFARQNRYGPPSGFP 196
           P+ S  ++  R    GPP+ FP
Sbjct: 353 PFVSIQEQIPRFRYIGPPTSFP 374


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 688 AYTLPLPARVMLNF 729
           ++ +PLP RV+ NF
Sbjct: 222 SFCIPLPVRVLPNF 235


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 299 TEPATRWFD*SFAPIPVPTIDLH 231
           +E    WFD +F P  +  +D+H
Sbjct: 557 SENHIEWFDYAFIPGNLKWLDIH 579


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,605
Number of Sequences: 438
Number of extensions: 5133
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)