Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0194
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0421 + 17793875-17794536,17794558-17795515,17795689-17796243 30 1.8
07_03_1107 - 24024387-24024497,24025799-24026410 29 2.4
11_08_0079 + 28189782-28189907,28190445-28190553,28190876-281909... 29 3.2
10_01_0085 + 1061962-1062141,1062283-1062431,1062734-1062819,106... 29 4.2
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928... 29 4.2
01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402... 29 4.2
09_06_0355 - 22492162-22492311,22492414-22492698,22492798-224931... 28 5.6
03_02_0649 - 10162202-10162366,10162455-10162533,10162614-101626... 28 5.6
02_04_0544 - 23768808-23768910,23769005-23769030,23769379-237694... 28 5.6
02_05_1260 + 35299795-35299905,35300065-35300112,35301181-35302356 28 7.4
02_01_0362 + 2607097-2607371,2607766-2608612,2608842-2608910,260... 28 7.4
>10_08_0421 + 17793875-17794536,17794558-17795515,17795689-17796243
Length = 724
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = -1
Query: 347 ARRSFSGLPGPLGQGEHADSFSVARVRPR-TSRASQTCYCSISCGSKTPVPLRRILIRR 174
A SF LP P + R+R R T C C +CGS P R L+RR
Sbjct: 232 ADESFGSLPAPPPLAAAVYGVADWRIRERMTELDGCLCVCQYACGSDGHGPCRLWLLRR 290
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -1
Query: 362 KPQSPARRSFSGLPGPLGQGEHADSFSVARVRPRTSRASQTCYCSIS 222
K ++PA S + PGP G G ADS + +SR + CS S
Sbjct: 179 KAKAPAASSTADAPGPAGDGVAADSTACPICDVFSSRCAAYLDCSCS 225
>11_08_0079 +
28189782-28189907,28190445-28190553,28190876-28190958,
28191500-28191562,28191658-28192854,28193247-28193310,
28193338-28193426,28194404-28194463,28195442-28195547,
28196057-28196069,28196940-28197111
Length = 693
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +1
Query: 319 PGNPLKLLRAGDWGLQLSPINEEFLVSASHKLALITSLPFVHTARRYYRLNDLVRSSD 492
PG L + R G+ GL + I +E +S +HK + SL H Y + +L +D
Sbjct: 284 PGQRLIIARGGEGGLGNACILKEMWLSKAHKEEEMASLSTGHPGTETYLILELKSIAD 341
>10_01_0085 +
1061962-1062141,1062283-1062431,1062734-1062819,
1062986-1063113,1063213-1063341,1063428-1063495,
1063575-1063812
Length = 325
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +1
Query: 310 PRGPGNPLKLLRAGDWGLQLSPINEEFLVSASHKLALITSLPFVHTARRYYRLNDLVRSS 489
P G PL+LL GDWG + N+ + K+A T + FV + + N L
Sbjct: 31 PVAAGAPLRLLVVGDWG-RKGGYNQTRVAEQMGKVAEETEIDFVVSTGDNFLENGLAGVD 89
Query: 490 D 492
D
Sbjct: 90 D 90
>02_05_1011 +
33487670-33487958,33490794-33492100,33492541-33492853,
33493190-33494247
Length = 988
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 318 PGQPAETPSCWGLGFAIIPHKRGIPSKRES*ARVDYVPALCTHRPSLLP--IE*FSEV 485
PG+P +TP W + + +P + +P+KR VD T R ++ I+ F EV
Sbjct: 443 PGEPRDTPRGWTVSPSGLPLRVSVPTKRGFTQFVDVGNVTATGRRNITGYCIDVFDEV 500
>01_07_0306 + 42638683-42638990,42639074-42639314,42639935-42640236,
42640431-42640607,42640853-42641617,42641697-42641791,
42641889-42641951,42642047-42642135,42642229-42642324,
42642457-42643104,42643596-42643628,42643838-42643912,
42644442-42644603,42644604-42644674,42644758-42644815,
42645196-42645394,42645487-42645552,42645699-42646183
Length = 1310
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 385 PRLWGIIANPNPQHEGVSAGCPGL*ARENML 293
P LW +++ P P+++ + G PG R +L
Sbjct: 1110 PFLWNVLSAPLPKNDAIDGGLPGSADRPKLL 1140
>09_06_0355 -
22492162-22492311,22492414-22492698,22492798-22493125,
22493523-22493674,22493878-22493969,22495948-22496107
Length = 388
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 520 ADGRKPPRVGPKTSLNHSIGSSDGR 446
ADGR+PPR ++S ++G + R
Sbjct: 94 ADGRRPPRAASRSSCGATVGMPEAR 118
>03_02_0649 -
10162202-10162366,10162455-10162533,10162614-10162670,
10162741-10162847,10163365-10163580,10163690-10163734,
10164100-10164258,10164714-10164818,10164902-10165084,
10165490-10165546,10165625-10165720,10166970-10167104,
10167188-10167262,10167380-10167479,10167682-10167842,
10167921-10168068,10168706-10169111,10169794-10169860,
10169953-10170162,10170570-10170711,10170809-10170870,
10170965-10171037,10171876-10171985,10172087-10172227
Length = 1032
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 175 RRIKILLRGTGVFEPHEIEQ*QVCDAL-DVLGRTRATLKESACS 303
RRI +LL G FE + Q +VCDAL +LG ++ +ACS
Sbjct: 528 RRIALLL-GQCAFEIKGVIQKEVCDALVGLLGDQDMAVRLAACS 570
>02_04_0544 -
23768808-23768910,23769005-23769030,23769379-23769497,
23769542-23769668,23769842-23769905,23769981-23770095,
23770867-23771101,23771196-23771382,23771948-23772305,
23772432-23772465
Length = 455
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -2
Query: 529 PNNADGRKPPRVGPKTSLNHSIGSSDG-RCVQRAGT*STRAYDSRLLGIPR 380
P G PP PKT+ + + SSDG R + + S YD R L + R
Sbjct: 24 PPYPTGSAPPVRLPKTACSATYFSSDGSRLLATVASASATVYDCRTLSVVR 74
>02_05_1260 + 35299795-35299905,35300065-35300112,35301181-35302356
Length = 444
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -3
Query: 633 PSSTVNMSSKILPQVPYGNLVTTFTSSK 550
P +V++++ P+VPY L+T+ +SK
Sbjct: 185 PPESVHLTTPSSPEVPYAKLLTSINNSK 212
>02_01_0362 +
2607097-2607371,2607766-2608612,2608842-2608910,
2609968-2610202,2610454-2610536,2610924-2611046,
2611326-2611379
Length = 561
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 359 PQSPARRSFSGLPGPLGQGEHADSFSVARVRPRTS 255
PQ P F GLP +G +H D ++A P S
Sbjct: 278 PQKPVENFFKGLPYAVGD-QHGDWIAIAHQHPLLS 311
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,540,164
Number of Sequences: 37544
Number of extensions: 406680
Number of successful extensions: 1100
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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