Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0194
         (647 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-2120|AAF48437.1|  984|Drosophila melanogaster CG5877-PA...    31   1.8  
EF057956-1|ABL84891.1|  413|Drosophila melanogaster Nup98 protein.     29   4.1  

>AE014298-2120|AAF48437.1|  984|Drosophila melanogaster CG5877-PA,
           isoform A protein.
          Length = 984

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 84  DKSLHQLRTAMHHHPPNQE 28
           ++ +H L TAM HHP NQ+
Sbjct: 211 EQQIHSLETAMEHHPSNQQ 229


>EF057956-1|ABL84891.1|  413|Drosophila melanogaster Nup98 protein.
          Length = 413

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 639 YRPSSTVNMSSKILPQVPYGNLVTTFT 559
           YRPSSTV +S   +P+ P+ +  +T T
Sbjct: 190 YRPSSTVRLSVSTIPENPFEDQSSTIT 216


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,902,936
Number of Sequences: 53049
Number of extensions: 649028
Number of successful extensions: 1749
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1743
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2744900550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)