Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0193
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    33   0.025
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    25   6.6  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    25   8.7  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   8.7  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    25   8.7  

>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 33.5 bits (73), Expect = 0.025
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +1

Query: 61  TRNPSPRQSSRASLEYLLLPPRSAPTEAPSGLTPRPFCALR-RARPTRYGLMIPN 222
           ++NP  R +SR+       PP+SAP++  S +   P  A + R R  R+G+   N
Sbjct: 191 SKNPQNRSNSRSKQRNKNAPPKSAPSKRKSNILDDPIEAEKARKRAERFGVAAKN 245


>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 332 KECATTHLPKQPALKMDGAEAFCLYTPLP 246
           K C+     K P LK +   +FCLY P+P
Sbjct: 292 KRCSLEQAAKFPWLKKN---SFCLYLPIP 317


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1429

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 1    P*AGGKL-HLRLNMTREQLLFTRNPSPRQSSRASLEYLLLPPRSAP 135
            P + G+L H+RL++T   +  T NP     +  SL ++L   ++ P
Sbjct: 1046 PGSNGQLNHVRLSITYMPVPMTLNPMESYINSGSLHFMLQDGQNLP 1091


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 113 YYHQDLHRRRLQAGSRPDPSALSVAHVLL 199
           Y  +DL RR+LQ  S+P  S  + A V++
Sbjct: 191 YKSEDLKRRKLQPSSKPLSSLEARAKVIM 219


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 576 ALGRNDLNLFSNFKWVRTPAYS 511
           A+ R++ NL SN+K+ + P YS
Sbjct: 50  AITRSESNLQSNYKYDQVPMYS 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,591,915
Number of Sequences: 5004
Number of extensions: 52969
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)