Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0193
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0610 - 7997406-7998047,7998379-7998426,8000719-8001143,800... 31 0.55
05_02_0028 - 5764980-5766374 30 1.7
03_05_0543 - 25404630-25405408,25405461-25405605 29 2.9
01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036 29 2.9
05_01_0304 - 2392526-2392828 29 3.9
01_01_0094 - 730484-731570,732030-732715 28 5.1
01_03_0106 - 12607995-12608327,12608863-12609063 26 6.6
12_02_1002 + 25176434-25176501,25176613-25176859,25178106-251781... 28 6.8
07_03_0625 + 20054380-20054434,20054819-20054853,20055387-20055941 28 6.8
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 28 6.8
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552... 28 6.8
08_01_0141 - 1115794-1117584,1117803-1117897,1119557-1119821 27 8.9
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353... 27 8.9
01_06_0956 - 33343503-33344086,33344225-33344384 27 8.9
01_01_0097 - 741881-742977,743100-743320,743438-744156 27 8.9
>04_01_0610 -
7997406-7998047,7998379-7998426,8000719-8001143,
8002301-8002589
Length = 467
Score = 31.5 bits (68), Expect = 0.55
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 43 REQLLFTRNPSPRQSSRASLEYLLLPPRSAP--TEAPSGLTPRPFCALRRARP 195
+E + F +NP SR L LLLPP P +AP PRP+C RP
Sbjct: 369 QEVVDFLKNPD----SRRLLLLLLLPPPGPPPLAQAPPRHPPRPWCRPHTPRP 417
>05_02_0028 - 5764980-5766374
Length = 464
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/64 (34%), Positives = 30/64 (46%)
Frame = +1
Query: 109 LLLPPRSAPTEAPSGLTPRPFCALRRARPTRYGLMIPN*KFSITRAGNGVYRQNASAPSI 288
L+ PPRS P+E+P L+P ALRR G + + S+ + G R S S
Sbjct: 300 LVSPPRSPPSESPP-LSPDAAGALRRGAWAGVGSPVNDVHVSLRQLRLGSPRSAPSCASF 358
Query: 289 FRAG 300
AG
Sbjct: 359 LPAG 362
>03_05_0543 - 25404630-25405408,25405461-25405605
Length = 307
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Frame = +1
Query: 70 PSPRQSSRASLEYLLLPP---RSAPTEAPSGLTP---RPFCALRRARP 195
P PR+ A L + PP R AP AP+ LTP + F A RR P
Sbjct: 136 PEPRRPPAAPLPGVRTPPSPPRRAPAPAPAPLTPALSQRFLAERRPAP 183
>01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036
Length = 1011
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 21 PSKAKYDSRATTVHAKPFSTSVLQGLAGVFATTTKICTDGGSKRAHA-QTLLRSPSRTSY 197
P + +S T HA S+ + G G + TK+C K + + + S ++ SY
Sbjct: 757 PGLSAMESLQTIAHANVTSSGIAMGELGDLPSLTKLCVMNCEKGPNKWKPFIVSLNKLSY 816
Query: 198 SLR 206
SLR
Sbjct: 817 SLR 819
>05_01_0304 - 2392526-2392828
Length = 100
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 21 PSKAKYDSRATTVHAKPFSTSVLQGLAG 104
PS + RATTV A+P +T+V G AG
Sbjct: 32 PSVYGANRRATTVKARPATTAVAAGFAG 59
>01_01_0094 - 730484-731570,732030-732715
Length = 590
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 330 LSGFRLPWPPSCCHERPTPFMVSHERFLGALT 425
+ G +LP P C + P P +V RF LT
Sbjct: 552 VDGLQLPSRPFFCDDEPLPLLVDSYRFSSELT 583
>01_03_0106 - 12607995-12608327,12608863-12609063
Length = 177
Score = 25.8 bits (54), Expect(2) = 6.6
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Frame = -3
Query: 383 RWSLMTAGRWPWKSESAKECATTHLPKQPA------LKMDGAEAFCLYTPLPAR 240
RW RW +S+ + T H+P + A L++P+PAR
Sbjct: 88 RWMRSHINRWMRRSQDEAQPITAHVPSLQGFFTLHHITTSAATTSTLFSPIPAR 141
Score = 20.6 bits (41), Expect(2) = 6.6
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -3
Query: 152 PLGASVGADLGGSSKYSSEALED*RGEG 69
P A AD GG S + E + RG G
Sbjct: 144 PCSADADADEGGGSVDADEDGDGGRGRG 171
>12_02_1002 +
25176434-25176501,25176613-25176859,25178106-25178171,
25178754-25178822,25179007-25179080,25180850-25180991,
25181546-25181596,25181769-25181774
Length = 240
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 142 PPSVQILVVVANTPARPW 89
PPS +LV+V P RPW
Sbjct: 174 PPSSALLVIVEEGPTRPW 191
>07_03_0625 + 20054380-20054434,20054819-20054853,20055387-20055941
Length = 214
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +1
Query: 37 MTREQLLFTRNPSPRQSSRASLEYLLLPPRSAPTEAPSGLTPRPFCALRRA 189
MTRE L +P ++ A+ L +S+P P G +PR ALR++
Sbjct: 64 MTRE--LEAIKAAPPHATAAATTPRRLRRQSSPVSVPCGASPRKIAALRKS 112
>06_03_0099 +
16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = +3
Query: 294 GWLLRQVSRCTLLSGFRL---PWPPSCCHER 377
G+LLR + LLS RL P PP CCH R
Sbjct: 63 GYLLRHSAHFLLLSA-RLRPPPPPPRCCHRR 92
>05_02_0003 +
5520331-5520476,5520572-5520644,5520762-5520928,
5520929-5521223,5521531-5521674,5521756-5521890,
5522004-5522093,5523702-5523809,5523905-5523986,
5525362-5525417,5525888-5525986,5526090-5526394,
5526898-5527075,5527167-5527280,5527376-5527507,
5527614-5527718
Length = 742
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = -1
Query: 457 RTGAVG*TKRSVKAPKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRLTCRSNQP 293
+TG G KR +KA +K S+D + R QQ G + + + ++Q+ +S P
Sbjct: 267 KTGDFG--KRPIKAMEKLSYDAICSGARCIQQQGNNSNMSRSDALQQYHSKSFNP 319
>08_01_0141 - 1115794-1117584,1117803-1117897,1119557-1119821
Length = 716
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 363 CCHERPTPFMVSHERFLGALTLRLVHPTAPVLLTKI 470
C E PF HE ALTL + PTA L+ K+
Sbjct: 324 CIRELAVPFF-HHEVVKRALTLGMESPTAEALIVKL 358
>02_05_0568 -
30034280-30034393,30034888-30035163,30035246-30035371,
30035595-30035753,30035893-30036063,30036374-30036493,
30036565-30036924,30038800-30039686,30039790-30040363,
30041379-30041507,30042423-30042494,30042572-30042728,
30042974-30043023,30043569-30044327
Length = 1317
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 67 NPSPRQSSRASLEYLLLPPRSAPTEAP 147
NP+P S+ + L PP +AP AP
Sbjct: 9 NPNPNPSTPFEVSMLFKPPSNAPAAAP 35
>01_06_0956 - 33343503-33344086,33344225-33344384
Length = 247
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 70 PSPRQSSRASLEYLLLPPRSAPTEAPSGLTPRPFCALRR 186
PSPR R + + LPP AP +P+ P P RR
Sbjct: 135 PSPRHKRRTAPAPMPLPPAQAPVWSPA---PAPAATQRR 170
>01_01_0097 - 741881-742977,743100-743320,743438-744156
Length = 678
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 330 LSGFRLPWPPSCCHERPTPFMVSHERFLGALT 425
+ G +LP P C + P P +V RF LT
Sbjct: 640 VGGLQLPSRPFFCDDEPLPLLVDSCRFSSELT 671
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,712,183
Number of Sequences: 37544
Number of extensions: 439132
Number of successful extensions: 1396
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1396
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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