Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0193
(616 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 32 0.35
At4g34240.2 68417.m04866 aldehyde dehydrogenase (ALDH3) similar ... 30 1.4
At4g34240.1 68417.m04867 aldehyde dehydrogenase (ALDH3) similar ... 30 1.4
At2g23340.1 68415.m02787 AP2 domain-containing transcription fac... 29 2.4
At1g48960.1 68414.m05487 universal stress protein (USP) family p... 28 4.3
At2g35890.1 68415.m04406 calcium-dependent protein kinase, putat... 28 5.7
At2g27810.2 68415.m03372 xanthine/uracil permease family protein... 28 5.7
At2g27810.1 68415.m03371 xanthine/uracil permease family protein... 28 5.7
At1g31250.1 68414.m03825 proline-rich family protein contains pr... 28 5.7
At3g07570.1 68416.m00907 membrane protein, putative similar to m... 27 7.5
At2g25100.1 68415.m03003 ribonuclease HII family protein contain... 27 7.5
At4g21990.1 68417.m03183 5'-adenylylsulfate reductase (APR3) / P... 27 9.9
At4g04610.1 68417.m00674 5'-adenylylsulfate reductase (APR1) / P... 27 9.9
At3g60320.1 68416.m06742 expressed protein contains Pfam profile... 27 9.9
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 27 9.9
At1g62180.1 68414.m07014 5'-adenylylsulfate reductase 2, chlorop... 27 9.9
>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
contains Pfam PF02138: Beige/BEACH domain; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies)
Length = 2946
Score = 31.9 bits (69), Expect = 0.35
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -2
Query: 252 VTGTCDAKFLIW-YH*AVTSRTCATESAEGSG 160
VTG+ D+ L+W H A TSRT +E + GSG
Sbjct: 2684 VTGSRDSTVLLWRIHKAFTSRTSVSEPSTGSG 2715
>At4g34240.2 68417.m04866 aldehyde dehydrogenase (ALDH3) similar to
aldehyde dehydrogenase [Arabidopsis thaliana]
gi|17065876|emb|CAC84903; contains Pfam profile PF00171:
aldehyde dehydrogenase (NAD) family protein; identical
to cDNA aldehyde dehydrogenase (ALDH3 gene) GI:17065875,
aldehyde dehydrogenase [Arabidopsis thaliana]
GI:17065876
Length = 390
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/70 (28%), Positives = 28/70 (40%)
Frame = +1
Query: 172 CALRRARPTRYGLMIPN*KFSITRAGNGVYRQNASAPSIFRAGCFGR*VVAHSLADSDFH 351
C + P R L + F I+R G G Y NA P + C+ SDF
Sbjct: 14 CFAKGFSPAR--LNVATSPFRISRRGGGGYCSNACIPYRLKFTCYATLSAVVKEQASDFS 71
Query: 352 GHRPAVMSDQ 381
G A++ D+
Sbjct: 72 GKEAALLVDE 81
>At4g34240.1 68417.m04867 aldehyde dehydrogenase (ALDH3) similar to
aldehyde dehydrogenase [Arabidopsis thaliana]
gi|17065876|emb|CAC84903; contains Pfam profile PF00171:
aldehyde dehydrogenase (NAD) family protein; identical
to cDNA aldehyde dehydrogenase (ALDH3 gene) GI:17065875,
aldehyde dehydrogenase [Arabidopsis thaliana]
GI:17065876
Length = 550
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/70 (28%), Positives = 28/70 (40%)
Frame = +1
Query: 172 CALRRARPTRYGLMIPN*KFSITRAGNGVYRQNASAPSIFRAGCFGR*VVAHSLADSDFH 351
C + P R L + F I+R G G Y NA P + C+ SDF
Sbjct: 14 CFAKGFSPAR--LNVATSPFRISRRGGGGYCSNACIPYRLKFTCYATLSAVVKEQASDFS 71
Query: 352 GHRPAVMSDQ 381
G A++ D+
Sbjct: 72 GKEAALLVDE 81
>At2g23340.1 68415.m02787 AP2 domain-containing transcription
factor, putative
Length = 176
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -3
Query: 185 RRRAQKGLGVSPLGASVGADLGGSSKYSSEALED*RGEGFRVNSSCSRV 39
R+ A+ G V LGA+V + GG ++ E +E+ R G N S RV
Sbjct: 109 RKAAEVGAQVDALGATVVVNTGGENRGDYEKIENCRKSG---NGSLERV 154
>At1g48960.1 68414.m05487 universal stress protein (USP) family
protein contains Pfam PF00582: universal stress protein
family; similar to hypothetical protein GI:7770340 from
[Arabidopsis thaliana]
Length = 219
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 88 SRASLEYLLLPPRSAPTEAPSGLTPRPFCALRRARPTR 201
S+ + L +P PT+ P L P P L R RP R
Sbjct: 172 SQIEISGLQVPEIPTPTKVPYRLCPSPHAILWRTRPRR 209
>At2g35890.1 68415.m04406 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium-dependent protein
kinase, isoform AK1 (CDPK). [Arabidopsis thaliana]
SWISS-PROT:Q06850; contains protein kinase domain,
Pfam:PF00069; contains EF hand domain (calcium-binding
EF-hand), Pfam:PF00036, INTERPRO:IPR002048
Length = 520
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -3
Query: 371 MTAGRWPWKSESAKECATTHLPKQPALKMDGAEAFC 264
+T+ WP SESAK+ L + P ++ + C
Sbjct: 351 LTSDPWPQVSESAKDLIRKMLERNPIQRLTAQQVLC 386
>At2g27810.2 68415.m03372 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 660
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 415 PKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRL 314
P KR D+ VGRS DG +GS +P+R R+
Sbjct: 114 PVKRRRDSDGVVGRSNGPDGANGSGDPVRRPGRI 147
>At2g27810.1 68415.m03371 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 709
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 415 PKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRL 314
P KR D+ VGRS DG +GS +P+R R+
Sbjct: 114 PVKRRRDSDGVVGRSNGPDGANGSGDPVRRPGRI 147
>At1g31250.1 68414.m03825 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
similar to prolin rich protein GB:S44189 GI:433706 from
[Zea mays]
Length = 165
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +1
Query: 76 PRQSSRASLEYLLLPPRSAPTEAPSGLTPRPFCALRRARPTRYGLMIP 219
P + AS L PP ++P+ P+G TP +L P+ IP
Sbjct: 109 PAGTPNASPSVKLTPPYASPSVRPTGTTPNASPSLTPPNPSPSEKFIP 156
>At3g07570.1 68416.m00907 membrane protein, putative similar to
membrane protein SDR2 (GI:1747306) [Mus musculus]
Length = 369
Score = 27.5 bits (58), Expect = 7.5
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +2
Query: 464 QNW-PTW-HRH---QISGFIFE*AGVLTHLKFENRLRSFRPNASNHSLTG 598
+ W PTW + H Q +GF+ GV+ L ENRL++ N S H G
Sbjct: 236 KQWDPTWFYAHIALQTTGFLLGLTGVICGLVLENRLKA--NNVSKHKGLG 283
>At2g25100.1 68415.m03003 ribonuclease HII family protein contains
Pfam profile: PF01351 ribonuclease HII
Length = 296
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Frame = +2
Query: 419 LNTTFGSSHSASSAYQNWPTWHRHQISGF----IFE*AGVLTHLKFE 547
+N FGS + + W H+H + GF F THLK E
Sbjct: 188 INRNFGSGYPGDPETKAWLVQHKHSVFGFPSLVRFSWGTCTTHLKGE 234
>At4g21990.1 68417.m03183 5'-adenylylsulfate reductase (APR3) / PAPS
reductase homolog (PRH26) identical to
5'-adenylylsulfate reductase [Arabidopsis thaliana]
GI:2738760; identical to cDNA PAPS reductase homolog
(PRH26) GI:1710113
Length = 458
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -3
Query: 404 LMGHHERRWSLMTAGRWPWKSESAKEC 324
L G HER GRW W+ AKEC
Sbjct: 294 LPGQHERE------GRWWWEDAKAKEC 314
>At4g04610.1 68417.m00674 5'-adenylylsulfate reductase (APR1) / PAPS
reductase homolog (PRH19) identical to
5'-adenylylsulfate reductase [Arabidopsis thaliana]
GI:2738756; identical to cDNA PAPS reductase homolog
(PRH19) GI:1710111
Length = 465
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -3
Query: 404 LMGHHERRWSLMTAGRWPWKSESAKEC 324
L G HER GRW W+ AKEC
Sbjct: 302 LPGQHERE------GRWWWEDAKAKEC 322
>At3g60320.1 68416.m06742 expressed protein contains Pfam profiles:
PF04782: protein of unknown function (DUF632), PF04783:
protein of unknown function (DUF630)
Length = 796
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 55 LFTRNPSPRQSSRASLEYLLLPPRSAPTEAPSGLTP 162
+F P P S ++ +++ PPR +P+ APS + P
Sbjct: 70 VFLHTPPPPLSEQSPAKFV--PPRFSPSPAPSSVYP 103
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = +2
Query: 41 LASNYCSRETLLHVSPPGPRWSICYYHQDLHRRRLQ 148
L+SN LL SP P W Y H H R LQ
Sbjct: 259 LSSNLALSNLLLQSSPSQPLWLYLYLHH--HHRPLQ 292
>At1g62180.1 68414.m07014 5'-adenylylsulfate reductase 2,
chloroplast (APR2) (APSR) / adenosine 5'-phosphosulfate
5'-adenylylsulfate (APS) sulfotransferase 2 /
3'-phosphoadenosine-5'-phosphosulfate (PAPS) reductase
homolog 43 (PRH-43) identical to SP|P92981
5'-adenylylsulfate reductase 2, chloroplast precursor
(EC 1.8.4.9) (Adenosine 5'-phosphosulfate
5'-adenylylsulfate sulfotransferase 2) (APS
sulfotransferase 2) (Thioredoxin independent APS
reductase 2) (3'-phosphoadenosine-5'-phosphosulfate
reductase homolog 43) (PAPS reductase homolog 43)
(Prh-43) {Arabidopsis thaliana}; identical to cDNA PAPS
reductase homolog (PRH43) GI:1710115
Length = 454
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -3
Query: 404 LMGHHERRWSLMTAGRWPWKSESAKEC 324
L G HER GRW W+ AKEC
Sbjct: 294 LPGQHERE------GRWWWEDAKAKEC 314
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,089,824
Number of Sequences: 28952
Number of extensions: 307260
Number of successful extensions: 834
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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