Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0186
         (463 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43930.1 68415.m05460 protein kinase family protein contains ...    29   1.2  
At4g10890.1 68417.m01772 expressed protein                             28   3.5  
At3g49060.1 68416.m05360 protein kinase family protein / U-box d...    27   4.7  
At2g36350.1 68415.m04461 protein kinase, putative similar to pro...    27   6.2  
At3g45780.1 68416.m04953 protein kinase / nonphototropic hypocot...    27   8.2  
At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3) iden...    27   8.2  
At1g11040.1 68414.m01265 DNAJ chaperone C-terminal domain-contai...    27   8.2  

>At2g43930.1 68415.m05460 protein kinase family protein contains
           similarity to NPK1-related protein kinase 2 GI:2342425
           from [Arabidopsis thaliana]
          Length = 204

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 211 EPRSYSIIPCTKYSRAFLARFEHSNLFKVKLSAHLDTHR 327
           EP    ++ C K S  F + FEH  LFK  +    + H+
Sbjct: 63  EPHIVLLLQCRKKSWCFASEFEHLKLFKGYIDEDEERHK 101


>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 116 RKTNISESICQRCFHQS-RTKVRGSKAIRYRPSSNRKYV 3
           ++T I   +C RC+H S R K+R S   R   S++   +
Sbjct: 194 KQTKICSRVCSRCYHYSMRQKLRHSLHTRILKSNSENAI 232


>At3g49060.1 68416.m05360 protein kinase family protein / U-box
           domain-containing protein contains Pfam profile: PF00069
           Eukaryotic protein kinase domain
          Length = 805

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 79  HLWQMLSLMFVLRRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIE 213
           H+W +     +  R+ N  SN    MPP++ ++      K+ K+E
Sbjct: 162 HIWFLCKGYLIFTRASNDDSNNRQTMPPLVQLDSDNETRKSEKLE 206


>At2g36350.1 68415.m04461 protein kinase, putative similar to
           protein kinase KIPK (KCBP-interacting protein kinase)
           [Arabidopsis thaliana] gi|7716430|gb|AAF68383
          Length = 949

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 266 PALSTLICSK*NCRPTSTLTEEH 334
           P+ S L+C K +C   ST TE H
Sbjct: 391 PSASQLLCQKCHCAVKSTSTENH 413


>At3g45780.1 68416.m04953 protein kinase / nonphototropic hypocotyl
           protein 1 (NPH1) / phototropin identical to SP|O48963
           Nonphototropic hypocotyl protein 1 (EC 2.7.1.37)
           (Phototropin) {Arabidopsis thaliana}, cDNA
           nonphototropic hypocotyl 1 (NPH1) GI:2832240; contains
           Pfam profiles PF00069:Protein kinase domain and
           PF00785:PAC motif
          Length = 996

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +2

Query: 320 LTEEHRDRILILNRRFLERRLTDDMLRKRVSITADACTDSAAHKCNY 460
           LTE  R+ IL  N RFL+   TD    K++    D  T+      NY
Sbjct: 499 LTEYSREEILGRNCRFLQGPETDLTTVKKIRNAIDNQTEVTVQLINY 545


>At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3)
           identical to FUSCA3 GB:AAC35247 [Arabidopsis thaliana]
           (Plant J. 6, 379-387 (1994))
          Length = 313

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = +1

Query: 115 RRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIEPRSYSIIPCTKYSRAFLARFEHSNLFK 294
           RRS + + N+    PP+ PI+H    L   KI+PR    +   +   + ++      L K
Sbjct: 53  RRSSS-SFNLLSFPPPMPPISHVPTPLPARKIDPRKLRFLFQKELKNSDVSSLRRMILPK 111

Query: 295 VKLSAHL 315
               AHL
Sbjct: 112 KAAEAHL 118


>At1g11040.1 68414.m01265 DNAJ chaperone C-terminal
           domain-containing protein contains Pfam profile PF01556:
           DnaJ C terminal region
          Length = 438

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 323 TEEHRDRILILNRRFLERRLT--DDMLRKRVSITADACTDSAAHK 451
           +E H D    ++RR+LE +    DD++  R  +   +  DS+  K
Sbjct: 38  SESHSDADSAIHRRYLEEKFAEEDDLIAARRGLRLQSMDDSSVFK 82


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,064,633
Number of Sequences: 28952
Number of extensions: 172470
Number of successful extensions: 380
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)