Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0184
         (421 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.51 
SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.89 
SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.89 
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_40863| Best HMM Match : RVT_1 (HMM E-Value=0.00014)                 28   2.7  
SB_43375| Best HMM Match : Pneumo_att_G (HMM E-Value=3.6)              28   3.6  
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.6  
SB_39168| Best HMM Match : Cgr1 (HMM E-Value=0.79)                     27   4.8  
SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)                     27   4.8  
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)                    27   4.8  
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)         27   4.8  
SB_15542| Best HMM Match : Lig_chan (HMM E-Value=0)                    27   4.8  
SB_56072| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_48009| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)               27   6.3  
SB_9526| Best HMM Match : Big_1 (HMM E-Value=1.8)                      27   6.3  
SB_12722| Best HMM Match : Oxysterol_BP (HMM E-Value=1.2)              27   8.3  
SB_31241| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14)                    27   8.3  

>SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 126 SRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRIIPR 266
           +R+  E +L + H L PP        +S   SA  +SA   F  IPR
Sbjct: 35  ARYRAEAQLNRRHGLSPPTPPEGISPLSSSSSASSSSAASPFHTIPR 81


>SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1560

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
 Frame = +3

Query: 81  DSIDLRDPNGLRRRVSRFECETRLVKSHCLE---------PPDSRGSTVSISLPDSARLA 233
           DS  ++DP G+RR++  F  E R V    L+         PP+S  S V        RL 
Sbjct: 101 DSPPIKDPPGVRRKIEEFTIEQRAVNKRRLDLLDTLRKMKPPNSTKSAVYEWHDTLIRLC 160

Query: 234 SALEAFRIIPRMV--ASHHRPLGECMNQMSATAV 329
             LE   +  R +  A +   + +C ++++   +
Sbjct: 161 KELEELSMKYRDIIQAEYDNVIEQCTDEVNRVKI 194


>SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1283

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -3

Query: 293 ERPVVRSYHPRDYPERL*GRSQPSRIRQG-YAHCGAPRVGR 174
           + P+ R  H RD P        P R+ +G Y H G P + R
Sbjct: 856 DTPMGRGMHQRDMPPEWHPAGNPRRVDEGPYMHDGPPHINR 896


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +3

Query: 135  ECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRIIPRMVASHHRPLGECMNQM 314
            ECE  +V  + L  P  +     ++   +A L+     F  I   V   HR L +C++Q+
Sbjct: 934  ECEHNVVSVNHLTKPILKEFKTDMASSINATLSHINRRFEKIKSSVTHKHRSLKQCVSQL 993

Query: 315  SA 320
            +A
Sbjct: 994  NA 995


>SB_40863| Best HMM Match : RVT_1 (HMM E-Value=0.00014)
          Length = 1236

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 21/82 (25%), Positives = 34/82 (41%)
 Frame = +3

Query: 45   LRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSA 224
            LRS   RVKKKTD   +      +   + ++C++   +      P   G   +I+ P S 
Sbjct: 1121 LRSTSYRVKKKTDCYKVPSEVPDKTPTAAYDCDSSADEDDTPATPAPPGIPTAITDPPSR 1180

Query: 225  RLASALEAFRIIPRMVASHHRP 290
             +    +A     R + S H P
Sbjct: 1181 DVPPQSDADASETRAMDSSHCP 1202


>SB_43375| Best HMM Match : Pneumo_att_G (HMM E-Value=3.6)
          Length = 774

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 1/118 (0%)
 Frame = +3

Query: 18  RHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFEC-ETRLVKSHCLEPPDSRGS 194
           R  T  +  L+  D      + S  L++        SR +   T+  + H  +  D+ G 
Sbjct: 597 RSPTPSHRSLKESDLHAVSVSPSGSLKEGTSATPSPSRGKSGSTKSARGHSRQNSDTHG- 655

Query: 195 TVSISLPDSARLASALEAFRIIPRMVASHHRPLGECMNQMSATAVPLVLSSITIATTS 368
            V+I  P  A     L  ++ +PR    +    G C   +S   V + +S+I+   +S
Sbjct: 656 IVTIEKPRRASTTDDLTRYQAMPRFHRRNLSDAGLCAVDLSQLHVDIDVSTISTNQSS 713


>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -1

Query: 196  VEPRESGGSK-QCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRS 41
            +E  +S G + +CD TSR+S   R       F ++R++   F   + S   RS
Sbjct: 2037 IEDLDSFGQRDRCDGTSRISRQSRSRIETDVFPTKRNLSHSFKDVKTSESERS 2089


>SB_39168| Best HMM Match : Cgr1 (HMM E-Value=0.79)
          Length = 358

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 225 RLASALEAFRIIPRMVASHHRPLGECMNQMSAT 323
           RLA A   ++I+ + +      +GEC+N+M++T
Sbjct: 150 RLAEAEAYYKILSKQIKKMLDSVGECINRMNST 182


>SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)
          Length = 2440

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 365 CRCDSNTAQYERNRSCGHLVHALAERPVVRSYHPR 261
           C  D+NT + E+ + C      L E     SY PR
Sbjct: 132 CEIDTNTVREEKKKRCRSASGVLEETDHTPSYEPR 166


>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 3369

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 2/114 (1%)
 Frame = -2

Query: 342  SVREEPQLRTFGSCTRRAAGGAKLPSAGLS*TPLRPKPA*PNPARICSLWSPESREALNN 163
            S+   P  RT      R     +  ++ +S  PL P  A P    +CSL +   R     
Sbjct: 3113 SLDASPVKRTSSPRMSRKPLSPESGTSSVSGDPLNPTHASPT---MCSL-THRVRAHHQP 3168

Query: 162  VTLLVAF--RIQNARRDVEAHLDRGDRCYRFFS*HVHHGSEGPDITQFDVGARN 7
            V++LVA   R+     D    + R D C R F+ H H       IT+  V + N
Sbjct: 3169 VSVLVASEGRVVTGSHDRTLKVFRTDHCVRIFTLHGHRDG----ITELKVDSNN 3218


>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
          Length = 1692

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = +3

Query: 102  PNGLRRRVSRFECET----RLVKSHCLEPPDSRGSTVSISLPDSARLASALEAF 251
            PN LR R S F         L    CL PP++ G    I L D + LA    A+
Sbjct: 1246 PNDLRGRWSDFFSNLFQLEHLELDRCLRPPNAEGKPWLIILSDGSDLAYGFAAY 1299


>SB_15542| Best HMM Match : Lig_chan (HMM E-Value=0)
          Length = 729

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 370 WLVVAIVILLSTRGTAVADIWFMHSPSGRWCEATI 266
           WL++ +V+L  T    V D+W   SP G   EA I
Sbjct: 290 WLLIIVVVLFVTIMMFVVDLW---SPFGHRAEARI 321


>SB_56072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -1

Query: 286 RWCEATIRGIILNASKAEASLAESGKDMLTVEPRESGGSKQC 161
           RW    +   +LN S  + S    G D +++  R++  +K C
Sbjct: 144 RWISGALLKEVLNGSGYKTSYVARGCDRMSISDRQTPENKHC 185


>SB_48009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 21/77 (27%), Positives = 37/77 (48%)
 Frame = +3

Query: 48  RSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSAR 227
           R  D   + KT +++ R+   L R + RFE +   V +   +  ++ GS    SLP + +
Sbjct: 48  RGNDQAPRGKTVAMEQRELE-LERMIDRFEKQQSEVMNAAQKFEEATGSLPDPSLPVANQ 106

Query: 228 LASALEAFRIIPRMVAS 278
           L  A+   R   R++ S
Sbjct: 107 LELAVRKIREHIRVIIS 123


>SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
          Length = 1242

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -1

Query: 292  SGRWCEATIRGIILNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRR 116
            SG +   T +  I    K + + AE+G D+L         ++Q   TS++  ++++TRR
Sbjct: 1013 SGNFKMDTAKSEIGGNFKMDTANAENGVDVLKTSASMVFNNEQFSATSQIKGTEKDTRR 1071


>SB_9526| Best HMM Match : Big_1 (HMM E-Value=1.8)
          Length = 649

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -1

Query: 292 SGRWCEATIRGIILNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRR 116
           SG +   T +  I    K + + AE+G D+L         ++Q   TS++  ++++TRR
Sbjct: 232 SGNFKMDTAKSEIGGNFKMDTANAENGVDVLKTSASMVFNNEQFSATSQIKGTEKDTRR 290


>SB_12722| Best HMM Match : Oxysterol_BP (HMM E-Value=1.2)
          Length = 640

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 269 GSFAPPAARRVHEPNVRNCGSSRTEQYYYRNDKPSVG 379
           G + P  ARR H   VR     +T++    +D P  G
Sbjct: 547 GRYWPRDARRTHLEKVREARKKKTQKMQKGSDSPHTG 583


>SB_31241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
 Frame = +3

Query: 147 RLVKSHCLEPPDSRGSTV-SISLPDSARLASALEAFRIIPRMVASHHRPLGECMNQMSAT 323
           +L     L+P    G T+ SIS  D AR      A            + L    N   A 
Sbjct: 122 KLASISTLDPAREVGKTLASISTLDPAREVGKTLASISTLNPAREVGKTLASISNLDPAR 181

Query: 324 AVPLVLSSITIATTSHQ*GKTNLSHDGLNPA 416
            V   L+SI+    + + GKT  S   LNPA
Sbjct: 182 EVGKTLASISTLNPAREVGKTLASISTLNPA 212


>SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14)
          Length = 1931

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 33   LYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPP 179
            L  D+R++ A V    D++  RD  GL R +       + V+++C   P
Sbjct: 1349 LIVDIRAKFATVLGSVDNLGARDAQGLSRDILMLLRLAQDVQTYCASAP 1397


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,236,830
Number of Sequences: 59808
Number of extensions: 258146
Number of successful extensions: 896
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)