Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0184
         (421 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.6  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   5.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   9.9  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 317 GHLVHALAERPVVRSYHPRDYP 252
           G+L   +  R +   YHP D P
Sbjct: 332 GYLPQDMVGRSLFDFYHPEDLP 353


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 317 GHLVHALAERPVVRSYHPRDYP 252
           G+L   +  R +   YHP D P
Sbjct: 38  GYLPQDMVGRSLFDFYHPEDLP 59


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 136 SKRE-TRRRSPFGSRRSMLSVFFLTRASRLRRSGYNSVRCRGSE 8
           ++RE  R  +PF +  +  S   L RA    RSG  SV+   +E
Sbjct: 502 ARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTE 545


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -2

Query: 306 SCTRRAAGGAKLPSAGLS*TPLRPKP 229
           S  R  AGG   PSAG    P+ P P
Sbjct: 399 SAVRSPAGGQLPPSAG---APMPPIP 421


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 163  CDFTSRVSHSKRETRRRSP 107
            CD    V HS ++T+++ P
Sbjct: 1487 CDSKLIVDHSSQKTQQQQP 1505


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,803
Number of Sequences: 438
Number of extensions: 1921
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)