Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0184
         (421 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60600.2 68418.m07603 1-hydroxy-2-methyl-2-(E)-butenyl 4-diph...    28   2.2  
At5g60600.1 68418.m07602 1-hydroxy-2-methyl-2-(E)-butenyl 4-diph...    28   2.2  
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain...    27   3.9  
At1g67970.1 68414.m07764 heat shock factor protein, putative (HS...    27   3.9  
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei...    27   3.9  
At4g18380.1 68417.m02728 F-box family protein contains F-box dom...    27   6.8  
At4g26190.1 68417.m03770 expressed protein                             26   9.0  

>At5g60600.2 68418.m07603 1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate synthase, putative / GcpE family protein
           similar to GcpE [Plasmodium falciparum] GI:13094969;
           contains Pfam profile PF04551: GcpE protein; supporting
           cDNA gi|27462471|gb|AF434673.1
          Length = 740

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 398 VRQVSFTLLMACRCDSNTAQYERNRSCGHLVHALAE 291
           +R  SF LL  CR  +   +Y    SCG  +  L E
Sbjct: 620 LRNTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQE 655


>At5g60600.1 68418.m07602 1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate synthase, putative / GcpE family protein
           similar to GcpE [Plasmodium falciparum] GI:13094969;
           contains Pfam profile PF04551: GcpE protein; supporting
           cDNA gi|27462471|gb|AF434673.1
          Length = 741

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 398 VRQVSFTLLMACRCDSNTAQYERNRSCGHLVHALAE 291
           +R  SF LL  CR  +   +Y    SCG  +  L E
Sbjct: 621 LRNTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQE 656


>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein
          Length = 564

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 12  EPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSH 164
           +PR R  LY D  +  + + K+T S+D+   NG +   S+ E   R+ + H
Sbjct: 149 KPRKRMRLYGDGGAVSSHLHKETSSVDV---NGFQVLPSQAESVKRIFERH 196


>At1g67970.1 68414.m07764 heat shock factor protein, putative (HSF5)
           / heat shock transcription factor, putative (HSTF5)
           identical to heat shock transcription factor 5 (HSF5)
           SP:Q9S7U5 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00447 HSF-type DNA-binding domain
          Length = 374

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -1

Query: 289 GRWCEATIRGIILNASKAEASLAESGKDMLTVEPRESGGSKQCD 158
           G W +  +       +K + ++ + GKD LT+E  E  G+ + D
Sbjct: 286 GAWEKLLLLSPSRKKTKKQENIVKKGKDDLTLEEEEEDGTMELD 329


>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
           hsp20 family protein contains Pfam profile: PF00011
           Hsp20/alpha crystallin family
          Length = 285

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 240 RPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAR-RDVEAHLD 100
           RPK   P  A + ++WSP S  A +  + +VA  +  A   D+   +D
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216


>At4g18380.1 68417.m02728 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 380

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = +3

Query: 135 ECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRIIPRMVASHHRPLGECMNQM 314
           + E   V+  C+   D   S +S    D  R ASA   F  I R+V    + LG+ + + 
Sbjct: 62  QVENVFVRVDCVISDDDSSSLLS----DKPRSASAASPFSAIFRLVFKPLQALGQFLKRS 117

Query: 315 SATAVP 332
            ++++P
Sbjct: 118 GSSSLP 123


>At4g26190.1 68417.m03770 expressed protein
          Length = 1067

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -3

Query: 137  FKTRDATSKPIWIAEIDAIGFFLNTCITAPK 45
            FKT++   KP+++ ++  +   + TCI+  K
Sbjct: 944  FKTQEKKDKPLFLKDLRRVWDHIGTCISCGK 974


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,021,666
Number of Sequences: 28952
Number of extensions: 179697
Number of successful extensions: 562
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)