Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0181
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.4  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    27   1.9  
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    26   3.3  
SPAC25B8.15c |||wybutosine biosynthesis protein Tyw3|Schizosacch...    26   3.3  
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    25   7.5  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   7.5  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   7.5  
SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyce...    25   7.5  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 18/75 (24%), Positives = 35/75 (46%)
 Frame = +1

Query: 262 HSSLLFRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNY 441
           H+S   R+++HS  HS++   LS+   LT SS    ++    Y    +  +T+  +    
Sbjct: 425 HNSTSSRSSSHSSSHSLSS--LSSKPILTASSSSLLTSSSHTYERSTVYVVTVETVSSGS 482

Query: 442 NALIRKSKRTLTITV 486
           +    +S +T  + V
Sbjct: 483 STYASQSTQTSILLV 497


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +1

Query: 229 YPYEPTPKDQSHSSLLFRTTNHSVIHSIAPF--FLSTSNNLTCSSRRSWSTMKE 384
           YP+ P     SHS  L     HS+  S+AP   +   S+ L  +S    ++ KE
Sbjct: 251 YPFVPANTRASHSPSLLEPYAHSLPSSVAPVGAYPEKSSYLLSNSSNDSASRKE 304


>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
 Frame = -2

Query: 222 YKQLEGESIVCTLRQHQPRRHSVR------GVEHVSRNLSLVQELVDFGHR 88
           +K L G       R+   RRH V       G+  ++RN S+ + L+D  +R
Sbjct: 261 HKVLHGVMFDLAEREGTRRRHQVDTIVEGVGINRMTRNFSIAEPLIDMAYR 311


>SPAC25B8.15c |||wybutosine biosynthesis protein
           Tyw3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 237

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 258 EPFKSVVPDNKPFGYPFDRPVLP 326
           E  KS VPD  P G+P D P+ P
Sbjct: 19  EGLKSSVPDASPKGHP-DSPIFP 40


>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 274 TDLNGSDP*VSVHTDRRIQTAGRGIHRMY 188
           T  NG+    S HT RR QT+G+  H+ Y
Sbjct: 67  TSQNGTSG-SSGHTKRRSQTSGKKTHQPY 94


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 9   RAKGYPGQSQITRSSTDFAFFKEDSFTDG 95
           R+  +PG + +TRS +D       +  DG
Sbjct: 382 RSNVFPGATDVTRSVSDHRILSSSTINDG 410


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 232 PYEPTPKDQSHSSLLFRTTNHSVIHSIAPFFLSTSNN 342
           PY P+ +D S  +LL  ++NH  +HS+ P  L   NN
Sbjct: 115 PYTPSIRDDSLLALLSFSSNHR-LHSM-PSQLQPFNN 149


>SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 189

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -2

Query: 243 RFIRIDEYKQLEGESIVCTLRQHQPRRHSVRGVEHVSR 130
           + I++D+YK +EG   +    + + RR + +  +H+ R
Sbjct: 142 KLIQMDKYKSMEGTKALDKYIEKKRRRRAQKEKKHLPR 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,528
Number of Sequences: 5004
Number of extensions: 49531
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)