Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0181
         (559 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420...    31   0.47 
09_06_0134 + 21065104-21065965,21066732-21066961,21067618-210678...    29   3.3  
06_03_0927 + 26015956-26018230,26018323-26018471,26018550-260186...    28   4.4  
11_04_0110 - 13539059-13539751,13539857-13540383,13541925-135424...    28   5.8  

>04_04_1457 -
           33741048-33741146,33741647-33741760,33741938-33742052,
           33742154-33742560,33743342-33743476,33743576-33743970,
           33744225-33744916,33745014-33745097,33745195-33745286,
           33745374-33745457,33745535-33745714,33746258-33746302,
           33746399-33746692,33747199-33747585,33747713-33747899,
           33748042-33748118,33748936-33749067,33749315-33749416,
           33749744-33749827,33749902-33749992,33750105-33750178,
           33750644-33750664,33751433-33751477,33752427-33752561,
           33752693-33752752
          Length = 1376

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 251 LGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSVGIFPW 117
           +G G+YG         N  +V +  +SLE I  E+LN+ +  F W
Sbjct: 26  IGKGAYGRVYKGLDLENGDFVAIKQVSLENIPQEDLNIIMSTFMW 70


>09_06_0134 +
           21065104-21065965,21066732-21066961,21067618-21067841,
           21067929-21068781
          Length = 722

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -2

Query: 234 RIDEYKQLEGESIVCTLRQHQPRRHSVRGVEHVSRNLSLVQEL 106
           +I  YK+ E + I   L +H+P + + + +EH+S    ++  L
Sbjct: 598 KISAYKRAENKVIETKLLEHRPEQDAKQRMEHLSEKKEMLNVL 640


>06_03_0927 +
           26015956-26018230,26018323-26018471,26018550-26018618,
           26018701-26018853,26018927-26019090,26019207-26019354,
           26020348-26020470,26020560-26020647,26020781-26020950
          Length = 1112

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 287 VVRNNRLEWL*SLGVGSYG*TNTNSWKGN 201
           +++NN LE L  LG G++G      W+G+
Sbjct: 832 IIKNNDLEELQELGSGTFGTVYHGKWRGS 860


>11_04_0110 -
           13539059-13539751,13539857-13540383,13541925-13542437,
           13542606-13542786
          Length = 637

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +1

Query: 100 IYKLLDQGKIPTDMFNSSDTMPSRLMLP-KGTYD--GFPFQLFVFVYPYEPTPKDQ 258
           + KLL  GK+ T + N++   PS L+   KG Y       +++V    ++P  +DQ
Sbjct: 373 VSKLLSSGKVQTHIMNNAGCTPSDLVKDCKGFYSMVRLVVKMYVSGVQFQPQRQDQ 428


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,061,359
Number of Sequences: 37544
Number of extensions: 294113
Number of successful extensions: 649
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)