Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0181
         (559 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02190.2 68414.m00150 CER1 protein, putative similar to CER1 ...    35   0.042
At1g02190.1 68414.m00149 CER1 protein, putative similar to CER1 ...    35   0.042
At4g10540.1 68417.m01726 subtilase family protein contains simil...    32   0.23 
At5g53790.1 68418.m06684 hypothetical protein contains Pfam prof...    29   1.6  
At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransfera...    28   3.7  
At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical ...    28   3.7  
At5g57610.1 68418.m07197 protein kinase family protein similar t...    28   4.9  
At5g46050.1 68418.m05663 proton-dependent oligopeptide transport...    28   4.9  
At2g31220.1 68415.m03813 basic helix-loop-helix (bHLH) family pr...    28   4.9  
At3g53930.1 68416.m05958 protein kinase family protein contains ...    27   8.5  

>At1g02190.2 68414.m00150 CER1 protein, putative similar to CER1
           GI:1199467 and maize gl1 homolog (glossy1 locus)
           GI:1209703 from [Arabidopsis thaliana]
          Length = 623

 Score = 34.7 bits (76), Expect = 0.042
 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
 Frame = +1

Query: 193 YDGFPFQLFVFVYPYE---PTPKDQSHSSLLFRTTNHSVIHSIAPFFLSTSNNLTCS-SR 360
           ++ FP +LF    P +    TP   S     FRT N+S+   I  F   T++NLT S   
Sbjct: 224 FELFPKRLFHLFPPLKFLCYTPSFHSLHHTQFRT-NYSLFMPIYDFIYGTTDNLTDSLYE 282

Query: 361 RSWSTMKENYSPIYLTFLTIH 423
           RS    +E+   I+LT LT H
Sbjct: 283 RSLEIEEESPDVIHLTHLTTH 303


>At1g02190.1 68414.m00149 CER1 protein, putative similar to CER1
           GI:1199467 and maize gl1 homolog (glossy1 locus)
           GI:1209703 from [Arabidopsis thaliana]
          Length = 627

 Score = 34.7 bits (76), Expect = 0.042
 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
 Frame = +1

Query: 193 YDGFPFQLFVFVYPYE---PTPKDQSHSSLLFRTTNHSVIHSIAPFFLSTSNNLTCS-SR 360
           ++ FP +LF    P +    TP   S     FRT N+S+   I  F   T++NLT S   
Sbjct: 224 FELFPKRLFHLFPPLKFLCYTPSFHSLHHTQFRT-NYSLFMPIYDFIYGTTDNLTDSLYE 282

Query: 361 RSWSTMKENYSPIYLTFLTIH 423
           RS    +E+   I+LT LT H
Sbjct: 283 RSLEIEEESPDVIHLTHLTTH 303


>At4g10540.1 68417.m01726 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 775

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +1

Query: 166 SRLMLPKGTYDGFPFQLFVFVYPYEPTPKDQSHSS---LLFRTTNHSVIHSIAPFFLSTS 336
           ++L+L +  Y G        VYP  P   ++S S    LLF  +NH++   +   F +++
Sbjct: 366 NKLILGQAMYTGPELGFTSLVYPENPGNSNESFSGDCELLFFNSNHTMAGKVVLCFTTST 425

Query: 337 NNLTCSSRRSW 369
             +T SS  S+
Sbjct: 426 RYITVSSAVSY 436


>At5g53790.1 68418.m06684 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 380

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 23  PWPVSDNAFIY*LCILQRRLFYRWPKSTSSWTKERFLLTC 142
           P P  DN +I  +   + +L+Y  P   S WT      +C
Sbjct: 135 PSPDDDNDYIVSVSFFRSKLYYCMPNRDSEWTSTNIPFSC 174


>At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransferase,
           putative similar to Swiss-Prot:P05055 polyribonucleotide
           nucleotidyltransferase (EC 2.7.7.8) (Polynucleotide
           phosphorylase) (PNPase) [Escherichia coli]
          Length = 991

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 301 IHSIAPFFLSTSNNLTCSSRRSWSTMKENYS 393
           + S++P   ST++NL   S+   STMKEN S
Sbjct: 877 LKSVSPKNNSTASNLVSFSKAKKSTMKENLS 907


>At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical to
           MAP3K epsilon protein kinase [Arabidopsis thaliana]
           gi|3549652|emb|CAA12272
          Length = 1368

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 251 LGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELN 141
           +G G+YG         N  +V +  +SLE IV E+LN
Sbjct: 26  IGKGAYGRVYKGLDLENGDFVAIKQVSLENIVQEDLN 62


>At5g57610.1 68418.m07197 protein kinase family protein similar to
           protein kinase [Glycine max] GI:170047, MAP3K delta-1
           protein kinase [Arabidopsis thaliana] GI:2253010;
           contains Pfam profile: PF00069 Eukaryotic protein kinase
           domain
          Length = 1054

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 284 VRNNRLEWL*SLGVGSYG*TNTNSWKGN 201
           +RN+ LE +  LG G+YG      WKG+
Sbjct: 776 IRNDDLEEIRELGHGTYGSVYHGKWKGS 803


>At5g46050.1 68418.m05663 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 582

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +1

Query: 235 YEPTPKDQSHSSLLFRTTNHSVIHSIAPFFLSTSNNLTCSSRRSW--STMKENYSPIYLT 408
           Y+  P+        + TT+ ++ + ++ F LST + +T    R W  + + E+    Y  
Sbjct: 482 YDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRGRGWILNNLNESRLDYYYL 541

Query: 409 FLTI 420
           F  +
Sbjct: 542 FFAV 545


>At2g31220.1 68415.m03813 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 458

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 205 PFQLFVFVYPYEPTPKDQSHSSLLFRTTNHSVIHS 309
           P Q  +   P  P P DQ H++L+ +  +H   HS
Sbjct: 76  PLQFHINPPPPPPPPCDQLHNNLIHQMASHQQQHS 110


>At3g53930.1 68416.m05958 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 711

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 25/75 (33%), Positives = 33/75 (44%)
 Frame = +1

Query: 142 FNSSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKDQSHSSLLFRTTNHSVIHSIAPF 321
           F+SS + PSR +      DG PF L       E +P    H+S +  +   SV    A  
Sbjct: 298 FHSSGSSPSRNIEEISQEDGLPFFLDDDSSGPEGSPSSFKHTSPMKSSYGFSVERREAA- 356

Query: 322 FLSTSNNLTCSSRRS 366
            LS   N+  SSR S
Sbjct: 357 -LSPLKNMDLSSRYS 370


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,713,794
Number of Sequences: 28952
Number of extensions: 251140
Number of successful extensions: 644
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)