Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0180
         (429 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   1.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   5.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   6.6  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            21   6.6  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   6.6  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 176 RIPWNSNAQAEKKTLPGPLG 117
           +IPW+ NA+A  K   G  G
Sbjct: 330 QIPWDKNAEALAKWANGQTG 349


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 130 PDLSAASSGHFGLPRRTLVFKDEG 59
           P +S++     G      VFKDEG
Sbjct: 2   PHVSSSGGDDLGSTDEVKVFKDEG 25



 Score = 20.6 bits (41), Expect = 6.6
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 255 FQGPQRVSGHRRKC 214
           F GP R++   R+C
Sbjct: 602 FHGPHRLAARSRRC 615


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +2

Query: 254 NSGEGCTWRCRAGSYPYPQQVS 319
           N G+G + +C      YP  +S
Sbjct: 616 NEGDGVSVQCTVSKGDYPLNIS 637


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 255 FQGPQRVSGHRRKC 214
           F GP R++   R+C
Sbjct: 494 FHGPHRLAARSRRC 507


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 16  FLFRNPAAEPFQ*SFPRL*KRVFDGVTQSGLKTPPRG 126
           F+   P+   F  + P L   +  G + S   TPP G
Sbjct: 60  FINSQPSMAEFMTALPHLSGDMTHGASISPQNTPPAG 96


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 16  FLFRNPAAEPFQ*SFPRL*KRVFDGVTQSGLKTPPRG 126
           F+   P+   F  + P L   +  G + S   TPP G
Sbjct: 60  FINSQPSMAEFMTALPHLSGDMTHGASISPQNTPPAG 96


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,396
Number of Sequences: 336
Number of extensions: 2280
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9460170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)